CI01000340_14318434_14336130


Basic Information

Item Value
gene id CI01000340_14318434_14336130
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14318365 ~ 14336258 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_14318434_14336130.mRNA
AGATTAATATTTCTCCATCAATATGGCTGGGTCAATAAAGAACACTATTAAGAGCACACTCATATATATAGGCAACAAACATATTTATTTTTTAAATTTAAATTAATTACGTTATATGTCAATATGTCATGGTAATACTTGTACTGCCAATAGGTCTGTCTTTATATTTTGAAGACGGTCATGATGATTTGGATGACTTTGGATTCGATGACTATGGTTCAGAGTGTGATGGGATTCGGATAACAGCATTCCTGGATTCAGGCCAGGATAATCTCACCCCTCTGGGCCGGCTGGAGAAATATGCTTTCAGTGAAAACGTCTTCAACAGGCAAATTGTGGCTCGTGGTTTGCTGGATGTGCTCCGGGAGTTCAGTGATAATGAAAATGACTTCATCAGTGTCATGGAAACGGTTGCCAGGATGTCTGAGGATGGAGAACCGACAGTGCGAGCAGAACTGATGGAACAGGTACCAAACATTGCCATGTTCCTCCATGAAAATCGCCCCAATTTCCCAGAAGCCTTCTCACGGTACCTTGTTCCCATTGTGGTCCGGTATCTCACAGACCCTAACAACCAGGTGCGAAAGACGAGCCAGGCTGCTTTGCTGGTGTTACTTGAACAGGGTCTGATGAGTAAGGCAGATATGGAGGGAAAGGTCTGCCCTGTGCTTCTGGAGCTCACTGAACCCAGCAGTGATGACGACTACAAGATCGAGGCTGTAGCGATAATGTGCAAGCTGGTGACCATGTTGACTAAAGACACGGTGCAACACCTTTTATTGCTGCGCTTTTGTGAACTCTGCAGTGACGTCAGACTATTTCAAGTCCGCAAGATGCCTAAGTTTTTCGACCTGTGCTCAGACAGTCTGTGGGGTATTCGGAAAGCCTGTGCTGAATGCTTCATGGTTGTTTCAAATTGCACTTCTCCAGAGGTGCGACGTACTAAATTATCCCCCTTGTTCATCAACCTCATTAGTGACCAGTCACGCTGGGTACGCCAGGCTGCGTTCCAGTCTCTAGGTCGTTTCATCTCCACGTTTGCCAACCCTTCTATCACAGGATTGCATTTCTGTGAGGATGGAACCCTCCGCGAGATACCGAAGATCTCCTCAGAGAGCCACAGACAGGAAGTGACCACCAGCAGTTTGAGTAACAGCCGCAATGCCTCCATTGATGGTTCTTCAGACAGTCTCATTCAGCCCCGTTCAGAGCAGCTACAATCCACCTCACACACAGCGGTTTCAGCATCACATCCTCCACATGGCCACTCCTCTGATAGCACCAGCCAGAGCCAGCCTGAAAGCTTAACCCCTTCATTCCACCAGCAGATGGATGACTGCACAATGTTCAACTCCTTCAACTTCTGGAGACCCCCGCTACCTGACATTACCCAAGACCTGCAGCTACTGCAAGTGGAGAAAAGAGATGTGGTGATAGAAGAAAAAGAAGAGACCATGAGAGAGACAGAAAGTGAGGGGAAAGAGAATGTGCCAAGTTTAGATGCACAAGGACCAGCCACCAGCTCCCAGATCCAGAAAGTTTTAGATTGTCTTCAGCCGCACCTAGATGATCCTGATGTTCAAGCTCAAGTGAAGGTGTTGTCCGCTGCGCTGAAAGCTGCCCAACTAGAGAGTCAAACAGAAGATGGCGATGAGTCTGTGTCAGAGTGTAACGGTTCCACAGACTCCCCGACGTCTGATGAGCTCAGTGCCATGAGTGAACTCTCACTGACAGACGCACAGATCTCAGACTCGCCCTCCACTTCACCTGTGCTGGTAGATGACTCTGAACAAAGCAGTGAGGAGTCAGACCTAATAGAAAATGTGGAGGAAGTCAAAGACTCTGACACAATTAAAACATGCGAAGAGGAGAAGTCTAAAGTCCAGAATGTAATTCCACAGCAGTTGCTGGATCAGTATCTGTCCATGACAGACCCCGCTCGAGCTCAGACCGTGGACACTGAGATTGCCAAACACTGTGCATTCAGCTTGCCAGGTGTTGCCCTAACGCTGGGCAGACAAAACTGGCACTGCCTCAAAGACACGTATGAGACCCTCGCTACAGACGTACAGTGGAAGGTGCGACGGACACTTGCATTCTCTATCCATGAGTTGGCAGTGATTCTGGGGGATCAGCTGACCGCGGCTGACCTGGTGCCCATATTTAATGGCTTCCTCAAAGATCTGGATGAGGTGCGGATAGGAGTCCTCAAACACCTGTATGATTTCTTGAAGCTTCTTCATGCTGAGAAGCGTCGGGAGTATCTGTATCAGCTGCAGGAGTTCATGGTGACGGACAACAGCCGAAATTGGAGATTCCGCTATGAGCTAGCTGAACAGCTCATCATGATCATTGAGTTGTACAGTCACAACGACGTCTATGACTACCTCAGACAGATTGCACTTAACCTTTGCTCTGACAAAGTGTCTGAAGTGCGGTGGATCTCCTATAAACTGGTGGTGGTGATCCTGCAGAAGTTTTATTCCTGTGAAGCTCATGACCTGGGTCTGAATTACATTAATGAGCTCATTATGAGATTCTGCCACTGTCCCAAATGGGTCGGACGTCAGGCGTTTGCATTCATTTGCCAGGCAATAGTGGAGGAGGACTGCATGCCCATGGACCAGTTTGCACAGCACCTTCTACCCAGTCTGCTCAGCCTCTCATCAGATCCTGTGCCCAACGTACGCGTACTAGTGGCCAAGGCGTTACGACAGAGCGTGTTGGAAAAACCATACTTCAAGGACCCAGGCAGCGCTTATTCAGATGAGCTAGAAGAGGCTCTGTCCGAACTGAGGATGGACAAGGACAGGGACGTGCGGTTCTTTGCCACACTGGATCCTAACAGAAACACTAAGAAGAGAAGGAACAACGGACGTGCAAAGAAGGGCCGTGGCCATGTCCAGCCCATCCGCTGCACCAACTGTGCCCGCTGTGTTCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCAGGAACATTGTGGAGGCTGCTGCTGTGAGGGACATCTCAGAAGCTAGTGTGTTTGACTCATATGTATTGCCGAAGCTCTACGTGAAGCTGCATTACTGTGTTAGCTGTGCCATCCACAGCAAGGTGGTGAGAAACAGATCCCGGGAGGCCCGCAAGGACCGAACACCACCTCCCCGCTTCAGGCCTGGCGGTGCTCCTCCCAGAGCTCCTCCGAAGCCCATGTGAAGCAAATTAACTGTCACATTTTGTGCATTTTTATGCAGAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_14318434_14336130.mRNA False 3244 mRNA 0.49 22 14318387 14336258

Neighbor

gene id symbol gene type direction distance location
CI01000340_14309675_14311339 RPLP2 coding downstream 6951 14309643 ~ 14311436 (-)
CI01000340_14255925_14261708 NA coding downstream 56634 14255757 ~ 14261753 (-)
CI01000340_14183801_14186441 NGF, NGFB coding downstream 131946 14183494 ~ 14186441 (-)
CI01000340_14152734_14153363 NA coding downstream 165024 14152175 ~ 14153363 (-)
CI01000340_14124155_14131724 SLC5A8L coding downstream 186651 14123873 ~ 14131736 (-)
CI01000340_14384828_14388836 APCDD1L coding upstream 47834 14384092 ~ 14389433 (-)
CI01000340_14442412_14444888 NA coding upstream 105156 14441414 ~ 14444910 (-)
CI01000340_14455602_14462035 NELFD, NELFCD coding upstream 119344 14455602 ~ 14463807 (-)
CI01000340_14467309_14496470 GNAS.L, MGC68706, GNAS coding upstream 130711 14466969 ~ 14496563 (-)
CI01000340_14506530_14506877 NA coding upstream 170148 14506406 ~ 14506877 (-)
G494812 NA non-coding downstream 34323 14282712 ~ 14284064 (-)
G494779 NA non-coding downstream 136415 14181466 ~ 14181972 (-)
G494727 NA non-coding downstream 176199 14134758 ~ 14142188 (-)
G494702 NA non-coding downstream 217074 14101000 ~ 14101313 (-)
G494696 NA non-coding downstream 227166 14090978 ~ 14091221 (-)
G494767 NA non-coding upstream 15750 14352008 ~ 14352223 (-)
G494762 NA non-coding upstream 43112 14379370 ~ 14382292 (-)
G494740 NA non-coding upstream 94635 14430893 ~ 14432098 (-)
G494729 NA non-coding upstream 103108 14439366 ~ 14440204 (-)
G494851 NA non-coding upstream 110492 14446750 ~ 14447088 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 1644862 12577435 ~ 12625758 (-)
G493266 NA other downstream 2201487 12067177 ~ 12116900 (-)
G493109 NA other downstream 2640393 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 3955983 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 4290404 10025656 ~ 10029589 (-)
CI01000340_14547725_14551493 NA other upstream 210741 14546999 ~ 14552983 (-)
G494872 NA other upstream 221365 14557623 ~ 14559023 (-)
G495475 NA other upstream 1270483 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 1835419 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 2178641 16514899 ~ 16518531 (-)
CI01000340_14121598_14122814 NA coding downstream 90534 14121467 ~ 14122814 (-)
CI01000340_13774456_13796883 PPM1J, PPM1H coding downstream 416465 13774300 ~ 13796883 (-)
G494688 NA non-coding downstream 142729 14070320 ~ 14070619 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033158 FO704848.1 coding NC_007117.7 CM002890.2 49529014 ~ 49537646 (-)
bowfin (Amia calva) AMCG00007973 ppp4r1 coding CM030123.1 CM030123.1 38679465 ~ 38692774 (-)