CI01000340_14576054_14589873 (RALY)


Basic Information

Item Value
gene id CI01000340_14576054_14589873
gene name RALY
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14575836 ~ 14590203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_14576054_14589873.mRNA
ATGTTTGCTCAAGGGCAGAATCAGCACCTTTACGGCCCCAGATATAGGCCTAACTATTATGTCTCTATTTGGATGATCCTGGCTATTGTGTTAACTAATATGGGTTATTATTATATTATACATAATAATGATGATAATGATGATAATGATAATAATAAAATGTGTTAAAATGTTTTAAATAATAAGAATTATTAATTATTTTTATTAACAATCAGGAATATGGTTTGTTCATTTCACAGTATGAAAAATCTACCTAATTAACATACAGCTGTAGGTCTAAGCTTAAAAAATCTGTTTCTTCCCCAGACTGCTGTTCACATTTCAACCAAGATGTCACTGAAAGTCCAGACGAGCAATATTACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATTGGCAACCTGAACACAGCGGTGGTGAAAAAGAGCGACGTAGAGACGATCTTCTCCAAATATGGCCGAGTTTTGGGCTGCTCGGTTCACAAGGGCTACGCCTTCGTTCAATACGCTAATGAGAGACACGCTCGTGGAGCAGTCATTGGAGAAAACGGACGTGTGCTTGCTGGACAAACCCTCGTGGAAGCCAAGGAGACTCTGGAGGCTGGAGTGTGGGGAAGAGAGACGCAGGATCATTCTAGGCTAGTTGAGTGGGTGTGGAGTGCCCTCTGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGACTGTTTGAGTATCGAGGCAGAGTATCACCAGTGCCCAGAGCAGTTCCAGTAAAGCGCCCCCGTGTGGCAGTGCCAGTTGTCCGCAGGGTGAAATCATTACCTGTCAAGCTTCTGACCAGATCTACTATCCTTCCCAACAGCTCTGTCAAACACAAGTTGAAATCTACCGAGCTGCAAGCTATCAAATCAGAACTGACGCAGATCAAGTCCAACATCGACGCGCTGCTGGGACGTCTTGACCAGATCACAGAGGACAAATACTGTGCCCCAGAGTTGCAGAAGGCAGATGAAATGAAGAGCGAATTGTCTCAGGACGAATCAGGCTCAGAGTCAGAGGAACTGCAGCATAGTGATGTCGAGGAGGGCGAGGACCACACACACGAGGAGTGTGACGAAGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTTCAATAAAAGGCAAGAACTCAAAGCTGGGGCAGTGGATTCTTGGATCAGTGATAATTCAAACCATGAGATATTTTACACGTTTTCAAGCTTGAGTTTCAAGATCTAAGATTGTTCTTCATGCAGAAAGCAGATTGTAAAAATGAAGTTAGAGAGTACAAACCACTAAATCTGGTTTCATGGGGCAATTGGTTAAACTCAGTTTGGTGTCCCTAAAGATCAATTAA

Function

symbol description
raly Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K12895 RALY, HNRNPCL2; RNA-binding protein Raly

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_14576054_14589873.mRNA True 1388 mRNA 0.42 7 14575836 14590203

Neighbor

gene id symbol gene type direction distance location
CI01000340_14547725_14551493 NA coding downstream 22853 14546999 ~ 14552983 (-)
CI01000340_14515689_14516087 ATP5E coding downstream 59310 14515341 ~ 14516739 (-)
CI01000340_14506530_14506877 NA coding downstream 68959 14506406 ~ 14506877 (-)
CI01000340_14467309_14496470 GNAS.L, MGC68706, GNAS coding downstream 79273 14466969 ~ 14496563 (-)
CI01000340_14455602_14462035 NELFD, NELFCD coding downstream 112029 14455602 ~ 14463807 (-)
CI01000340_14823900_14824982 NA coding upstream 233568 14823771 ~ 14825387 (-)
CI01000340_14835497_14846831 MTSS1 coding upstream 245033 14835236 ~ 14846831 (-)
CI01000340_14872482_14891188 NA coding upstream 281877 14872080 ~ 14891618 (-)
CI01000340_14894726_14899916 OSGN1 coding upstream 303390 14893593 ~ 14899916 (-)
CI01000340_14910995_14919035 PIGU coding upstream 320396 14910599 ~ 14919357 (-)
G494869 NA non-coding downstream 11209 14562097 ~ 14564627 (-)
G494855 NA non-coding downstream 32317 14542418 ~ 14543519 (-)
G494719 NA non-coding downstream 109908 14464258 ~ 14465928 (-)
G494852 NA non-coding downstream 128319 14447184 ~ 14447517 (-)
G494902 NA non-coding upstream 126088 14716291 ~ 14716574 (-)
G494867 NA non-coding upstream 153514 14743717 ~ 14745057 (-)
G494861 NA non-coding upstream 157767 14747970 ~ 14749440 (-)
G494854 NA non-coding upstream 164680 14754883 ~ 14756719 (-)
G494909 NA non-coding upstream 178801 14769004 ~ 14769214 (-)
G494872 NA other downstream 16813 14557623 ~ 14559023 (-)
CI01000340_14318434_14336130 NA other downstream 255559 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 1902311 12577435 ~ 12625758 (-)
G493266 NA other downstream 2458936 12067177 ~ 12116900 (-)
G495475 NA other upstream 1016538 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 1581474 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 1924696 16514899 ~ 16518531 (-)
G496845 NA other upstream 2453520 17043723 ~ 17045688 (-)
G496853 NA other upstream 2587289 17177492 ~ 17242739 (-)

Expression


Co-expression Network