XLOC_013590


Basic Information

Item Value
gene id XLOC_013590
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 41350989 ~ 41351483 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026991
GAAATTGCCACTACAATTTGGTGTCAGAATAGTGGGATGTCTTGGAGGAACTTTTCCGGACCCTGCGGACGGTGACTGATCATCCTGGGACTTCGTGTCACAGCCCTGCCCCACTTGGTTGAGGGTTGAGGGGCCGACCGCCGGGCTCGGAGAAGAACCCCACTGACATCTGGGAAAAAGAACTCAGTGGCATCTGAACTCTCTGGTAAGAAACAAATTCtttgtttattgttaaaaaagaaatttaacaAGTTTTGGGTATTTGATTAGGCAATTTAAAAGGGTTTTTACTGCAATTTGGGTCATCACCATGCTGGCGGGTCTGTCTCTGTGGGATAGCGGCGTGATTAATACAAGTGAGATCTGACATCAGGCGGGGATCGAGACCTTTTTACAAGTGAGATCTGGCGTTTAGCTGAGATCAAGACCTTACACAAGTGAGATCTGGTGCCTGACTAAGATCAAGACCTTTCTAATACGTTTGGCTAGCTAACT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0021983 pituitary gland development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005730 nucleolus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026991 True 495 lncRNA 0.46 1 41350989 41351483

Neighbor

gene id symbol gene type direction distance location
XLOC_013589 NA coding downstream 6168 41343806 ~ 41344821 (-)
XLOC_013588 NA coding downstream 118061 41232314 ~ 41232928 (-)
XLOC_013587 fbxo36a coding downstream 118692 41226444 ~ 41232297 (-)
XLOC_013586 zbtb38 coding downstream 131199 41198559 ~ 41219790 (-)
XLOC_013585 RASA2 coding downstream 186631 41097406 ~ 41164358 (-)
XLOC_013591 ptx3a coding upstream 12954 41364437 ~ 41375120 (-)
XLOC_013592 NA coding upstream 191059 41542542 ~ 41544182 (-)
XLOC_013593 fzd9b coding upstream 297329 41648812 ~ 41650648 (-)
XLOC_013594 grk7b coding upstream 389259 41740742 ~ 41754020 (-)
XLOC_013595 rnf7 coding upstream 405780 41757263 ~ 41766098 (-)
XLOC_013384 BX323829.1 misc downstream 21808758 19542102 ~ 19542231 (-)
XLOC_013575 NA non-coding downstream 828465 40521492 ~ 40522524 (-)
XLOC_013574 NA non-coding downstream 835910 40513030 ~ 40515079 (-)
XLOC_013571 NA non-coding downstream 898699 40364311 ~ 40452290 (-)
XLOC_013598 NA non-coding upstream 1109405 42460888 ~ 42606669 (-)
XLOC_013600 NA non-coding upstream 1506520 42858003 ~ 42859256 (-)
XLOC_013601 NA non-coding upstream 2095836 43447319 ~ 43450341 (-)
XLOC_013602 NA non-coding upstream 2238061 43589544 ~ 43592912 (-)

Expression


Co-expression Network