CI01000340_15334006_15357378 (CHD6)


Basic Information

Item Value
gene id CI01000340_15334006_15357378
gene name CHD6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15333088 ~ 15357378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_15334006_15357378.mRNA
AAGAGGCGATCAGGGCGTCAAGTGAAACGGCGGAAGTACAACGAAGATCTTGATTTCAAGGTCGTGGATGATGACGGGGAGACCATTGCTGTTTTGGGCGCGGGCCGAATTGCCGCCATGTCTTCCTCTACCCTTGCCTGGCAGGCCGAGGAACCCCCTGAAGATGAGGCTAATATTATTGAGAAAATACTTTCAGTGCGAACGGTCAAGAAAGAGACATCCCCTGATGAACCACCAGAAGAGTTGGAGGAGTTTTACGTCAAGTACAGAAATTTCTCCTATCTGCACTGTAAATGGGCGACCTTGGAGGAACTGGAGAAGGACCCACGCATACACCAAAAAATCAAGCGCTTCAGAAACAAGCAGGCACAAATGAAGCACATTTTCACAGAGCCGGATGAAGACCTTTTTAATCCAGATTATATTGAGGTTGATCGGGTTTTAGAGATCGCTATCACCACCGATACAGAAACAGGAGAGGAAGTTACACACTACCTGGTGAAATGGTGCTCTTTGTCATATGAGGAGAGTACTTGGGAGCTACAGGAAGATGTTGACCCTGTGAAAATCCGAGAGTTTGAAGACCTCAAGAAAATTCCAGAAATTAAACAGGTGGAAAGGCCTCTGCCAGAACAGTGGCAAAAACTGGAGAAGTCCAGAGAATACAGGAATGGGAACCAGCTCCGAGAATACCAGTTAGAGGGAATGAACTGGCTTCTTTTCAACTGGTACAACAGGAAAAACTGTATTCTGGCTGATGAGATGGGGCTGGGGAAGACCATCCAGTCCATCACGTTCCTCTTTGAGATTTTCCTCATGGGTCTGAGAGGACCTTTCCTCATCATCGCCCCACTCTCCACCATCACCAACTGGGAGAGAGAATTCCGCACATGGACTGAAATGAATGTCATTGTCTATCACGGCAGCCAAATCAGTCGGCAGATGATCATGCAGTATGAGACGTACTACCGAGATGAACAGGGAAACATCCTGTCTGGTCAGTTTAAGTTTCATGGCGTGATCACTACATTTGAAATGATAATGGCTGACTGTCCAGAGCTGAAGAAGATTAACTGGCGCTGTGTGGTGATTGACGAGGCCCATCGCCTAAAAAACCGCAACTGTAAACTGCTGGAGGGGCTCAAACTCATGAACCTGGAACATAAAGTCCTTCTCACAGGAACCCCTTTGCAGAACTCAGTTGAGGAACTCTTTAGTCTGCTTAACTTTCTCGAGCCCTCACAGTTCCCTTCCGAGACTACATTCCTGGAGGAGTTCGGAGACCTAAAGACGGAGGAGCAGGTAAAGAAACTGCAAGCCATTCTGAAGCCCATGATGTTGAGGAGACTGAAGGATGATGTGGAGAAGAATCTGGCCCCTAAAGAAGAGACAATCATCGAGGTGGAGCTCACTAACATTCAAAAGAAATACTACCGCGCCATTCTGGAGAAAAACTTTGCCTTCCTTGCCAAGGGAGCGAACCAGCACAACATGCCCAACCTCATCAACACAATGATGGAGCTTCGCAAATGCTGCAATCACCCATACCTCATTACAGGCGCTGAAGAAAAGATTCTTGAGAGCTTCAAGAAAACCTACAGTTCTGACGCTGTGGATTTTCAGCTGCAGGCAATGATCCAGGCCGCTGGTAAACTAGTGCTTATCGACAAGTTGCTGCCCAAACTGCTGGCCGGAGGACATAAAGTGCTGGTGTTTTCCCAGATGGTTCGATGCCTTGATATACTGGAGGACTACCTCATTCAGAGGAGGTATACATACGAACGGATTGATGGGAGAGTTCGAGGGAATCTACGGCAGGCTGCCATCGATCGCTTCAGTAAGGTGGACTCCGACCGATTCGTGTTCCTCCTCTGTACACGAGCAGGAGGTCTAGGCATCAACCTTACCGCTGCCGACACCTGTATAATTTTCGACTCAGACTGGAACCCACAGAACGACTTGCAGGCTCAAGCTCGCTGCCACCGGATCGGTCAAAGCAAAGCGGTGAAAGTGTATCGACTTATCACACGAAACTCATACGAGAGGGAGATGTTTGACAAGGCCAGTCTGAAACTGGGATTGGACAAGGCTGTTCTGCAAGACATCAACCGCAAGGGCAGTCTCAATGGGGTTCAGCAACTGTCTAAGATGGAGGTAGAAGATCTTCTCAGGAAGGGGGCTTATGGGGCGCTCATGGATGAGGAAGATGAGGGATCTAAATTTTGCGAGGAGGATATTGATCAGATCCTGCAGCGACGCACACAGACCATCACAATCCAGTCTGAGGGGAAGGGATCAACTTTTGCCAAGGCTAGCTTTGTGTCTTCAGGGAACCGTACAGACATCTCTCTGGATGATCCAAACTTCTGGCAGAAGTGGGCCAAAATTGCTGAACTGGAAATTGACTCCAAGGCAGAAAAGGAGAGTCTGGTGATCGACACACCTCGCGTACGGAAGCAGACGCGTCACTATAATTCATTTGAGGACGATGAACTGATGGAGTTCTCTGAACTGGATAGCGACTCAGAAGAACGTCCCTGTCGCACAAGACGTCTCAGTGATCGCAACAGACGCTACCTCCGAGCAGAGTGCTTCAGAGTGGAGAAAAACCTTCTTATTTTTGGGTGGGGTCGCTGGAAGGATATTCTCAATCATGGGCGTTTTAAATGGCACCTGTCGGAGCGAGACATGGAGGTGCTGTGCAGGGCTCTTCTGGTCTACTGTGTTCGCCATTATAAAGGAGACGACAAAATTAAAAGCTTCATCTGGGATCTGATCACACCCACTAAAGACGGACATAATCAAGCACTGCAAAACCACTCAGGTCTGTCTGCTCCTGTCCCACGGGGTCGTAAAGGCAAGAAGCTGAAGAACCAGTTGAGTCCACCTGAGCTAAAGAGTGCCGACTGGCTGGTCCACTGTAACCCAGAGGTCGTGCTTCAGGACGACAGCTACAAGAAACACCTCAAACAACACTGCAACAAGGTGCTACTGAGGGTGCGGATGCTGTACTATCTGAAGGTTGAAGTGCTGGGGGAGGCTGCTGATCAGGCTCTTGAAGGGATCCCAGCCAGTAAACTGGAGGTAACACTGCCTGATATCGACTACATTGAGATCCCTACTATATGGTGGGATGCTGAGGCGGATAAATCTCTGCTTATTGGGGTTCACAAACATGGGTATGAGCGGTATAATGCCATGCGTGCAGACCCTGCTCTGTGCTTCTTGGAGCGGGTGGGAATGCCTGATGTCACTTCACTGACGGTAGAACAAGGTGGAGCAGAAACTGCTTCAGATGCACCTGATAGTATCAGTAAGAGTGATGAAATTAAAGAGGAAAACGACATGAAGTCTGAGGAATTAGAAGAGAAAGTAGAGATCAAGGAGGAGCCCATGTCAGAAGAAACAGGGAAAAATGACACTACGGTGACAGGGGGCTTTGTAGCATCTCTTGCAGGAGACCTAATTACAGAGATGATGGAACAGGGGCGGATACAGTGGCCGGCAGGCTCGGCTCTTACAGCACGTCTACGCCGCCTCATTACTGCATATCAGCGTTACACACGGCGTGAGCCGCTTCGTCATGATTTCCTCTTACACGATGGAATTGCACCTGTGGCATGGCAAATTGGAGAGTTTAGGCACTGCACAACTGAGCCTGACCCGCTCTTTTTGGAGTGGCAACGAAGGTGGACACGTCGTGAACAGGCTGACTTCTATCGCACAGTGTCCTCGTTTGGAGTAGTGTATGACCCAGAGAAGAAAACCTTTGACTGGGGCCAGTTCCGTGCCCTTGCTCGATTGGAGAGGAAGACAGACGAAAGTTTGGAGAGATATTTCCACAGTTTTGTTTCAATGTGTCGCACTGCATGTAGACTACCGCCTAGAAAAGATGAAGGTACCGTTGATTCTTCGCTGTTGGTGGAACCCATTACAGAAGAGCGAGCTGCCCGAACATTATACCGTATCGAGCTTTTGAGAAAGGTCCGTGAACAAGTATTGCGGCACCCACTCCTGGGGTCACGACTGCAGCTTTGTCGCCCTAGTCTGTACTTGCCTGTCTGGTGGGAGTGTGGCAAACATGACCGTGATCTTCTCATTGGTGTCGCTAAGCATGGCTTGAGTCGAACTGACTTCTACATCCTCAATGACCCACAACTATCCTTCCTGGAGGCCCATCGGAACTATGTTCATAAAGAAAACCACAGATATCCAGTCCCAGGCTTGCCCCACCATCATTGCTGCTTGTATGATGCCAACCTCGGACATTGTCAGTCCCCACAACCTCTGGAGTATCACCACACACATTCACCCCACACGCCAACACAACTTGTCCATACACATGGGCATCACCAACCCACAGAAGTGGTGGCGTCAGAGCCAGGAAGTTCCCTGGGGATAGGTACAGGAAACAGAGATGGATTTTTGGACTGCCCTCCATTGGATGACTCACTGGAGTTGGGGTCTTTACAACATGAAGGCTTGACATCAGACACACTACATAGCAAATCTGGTAAAGAGGCCTTCAACGGATTCCCGTTCAATTCTGCAACTGGTGGGCAGAATATGCTAAATTCATATGGTGTGCAAGGGGAGCTAAATGGGGCTCAAGGAGACATGGCGGACTCCATAGCTGGGAAACTTCGCAGCGATGTTCTCGTGGGAGAGCAAGGTTCCTCAGAGGAGACTGGCTTAATGGCTCCTTCTGTGGAACTCGATGAACTTCAAACTCCATGGGAAAGCTCAGACCATGTTGAAACCTCTGACATGTTCAACGAGACTGATCCCATTTTGGGAGCACAAGCTTTGGAACCCAGCTTTCTGGATGCTCCTCAGCCAGACGATGGACGGGAGGGTGATGAAACGCTAACTGACTGTTTGAGCATGCCCAGTTCGGACTCTCAAAGCAACCCTGTCGAGCCACTGGCTCCGAGCTTTATGTTGTTCAAAGACCTTAATGTTGGAGAGACGTCTGTGGATCAGACAGATCTATCAGCCAGTCTTCCAGAATTTGTTCCACCACCTCTTGGTCTCCCGGATGTGAGTCTTGACCAGGCAGATCCCATCAGTGAGGATCAAGAGGACAAGCTTAGCGATTCCAACATCACACATGGTGTTCCCAGTCCAGGAGAAGGAGCTGAAAGCATAGGGTTCCATTTTGAGAAAGAAGACCTTTCTCCAGACAGTTCGAAGACTAAGGATTCTCAAGATGAAATTGACAAGATGCCTTCAATAGAGTCTCCAAGGGAAAATTGTCTTGAGGAATCCCAGAAAGGGGACTGCAAGGTGACATTTGATGATTCCAATGAAGGAGACTTGAAAGATCCTTGTGAAGTGGCCTTGGAAGAATCTTATGTAAAGCCTCTAAGAGAGCCAGAAAAAGTGCCTTTAGAGGAGTCTTATGATTTGACTTGTGACGAGACCCTGCAGGAACCTTGTGAAGGGTTTCAGCAAGACGCAGCTGAACAGCACTTGGTGGAAGAACCCTCTGAAGAATCCTGCAAAGAACTGTCAGAGCCAATAGAAGAGTGCAATCTAACTAACACTACTCTCTCAACAGATTACCCTTTGCCTTCTTCACTCCCATCATCTCCAACTACCTTACCTGACACCTCTGTATCTCCAGTCCTTGATGCAGTCCCAAAACAAGAGTTCCTCATGGATCCAGTGGTGTCAGATGTGAAGCCTGAGCCAGACAGCACTACGCAGACCCCTCACCTTGAGCAGACTGAGGTTTTGGATGTAAAGGACAAGATAAAAGACGAAGGTGCAAAGACACCAGCATTATTGGGAGATGTTGATGCACCACGCTTTGCGCTGCCCATGTGCGAGATGGCAGACAATGTCCATGAAATAAGGGAACCAACCATTGCTCAGCTTTTACAGGAGAAAGCACTCTTCTCCTTCTCAGAGTGGCCTAAGGACAGAGTGATCATCAACCGTATTGATAGTATCTGCCATACTATCTTAAAGGGGAAGTGGCCTTCCTCTAGTCAACAGTACGAGTCTCCCACCGCATTGGCTAACACTTGCATGCCCAGTAGTGCCCACCAGAGGGCAGGATTTCTGCCTACCAGAATGCCTATATCTCAGAGCCTTAACTTCAACCTCACACACACAGTACCCCACTTACCAAAGGAGAGGTTAGTTGCCCCAGCATTTCTCCCTGAGCTCAAACGTCCCAGACGTGGGTTTGAATTCGAGGCAGAAGTTCTTGCCAAACCAAGCCATCTTGGAGAAAAGATTCAGGTTGGCGTGCCTCATCGTGCTAACACTCTCCTCCTTAATGGCTGGCAGGATACTGCTATTGACCTCTCCAAACCAACAGAGCTAACAGTTGGTGGAGACAGTGGGCCAATCAGTCATATGAGCCACACTGTCCAGTCAGCACCCCACAAAATAACAGGGATAGGCTCCATACAAGGCTCACTGGGATTAGATATGGCTGGCATTTTGCAGGCTGGCTTGATTCACCCTGTCACAGGGCAGATTGTCAACGGCAGTCTTCGTCGTGATGATTCAATGTTGAGACGGAGGAGAGGACGAAGAAGAAATGTAGAGACTCCTGATCTCGGCTTTATGAAGGGACGAGCCATGAACTTGCCTGAACAACAGTGTGGGTCAGAGAGCATCAGCCAGCCTGTTGTGTCCTCAACATCCTCTCAGTCAGAATGCCCTCCATCCACCCCGACTACACTTCCTACTCACCCTCCAGCATCATCTCCAGCTCCTCCTCCAGCCTCAGAGGCCCTGAATGTGAGCGTGGACAGGGAAACGGCCAATAAAGGCCTAATGGAATGGCTCCGACAAAACCCCAACTACAACATGGAGCTTTCCGCTTTTCCATCGTCTCAGAATGTGAGCATGTTGCACAGTTTCTTGGAGCGTCCAAAGCAGAGAAGGCATCGCTGCAAAGACCCCACCAAGCTCGACGTCAGCTCTCTAACTGGAGAGGAGAGAGTCCCAGTAGTGCACAGAAACACAGGCCGCAGGCTTGGAGGCGCTATGGCTCCAGCCATTAAAGAGCTCTCCCGATGGCTGGATGCAAATTCAGAATACTCTGTGGCTCCTGATTGGGCGGATGTGGTGAAGCATTCAGGTTTTCTACCGGAGGGCAAATTCACACGCATCCTCACTGGACCCGTGTGTCGGGATCCCGGTCCACGCAGAAGAGGCAGGCGACCCCGCAGCGAGATGCCCAAAGCCCCCGAGCTCCCCTCTGGCATGGGTCCGCTCTTCATGAACGGTGGGCTTATTAGCAGTATGGATCTGGTTAGTTTACCCAGTCTCCGCAATGTCCCTGGCATCCCGCTAACTGGTATCATGGGCTTTCCTCATGGTTTCGCCGCTGCCGTATCATCAGGAGATGATGCCAAGAATGGACTCGGCATGCTGCCCATGATGCTCCACGGCATGGCGGCCGTTCAGCCGCCCATGTATAGCGCTCACATGAGTGGGATGATGAGTCAGTCGCTGTCCACAGCGACATCCACTACATCCACCGCAACCGCATCCTCCACTACAGCGAGTGTGACTTCTACGAACTCTGCAACCGTAACCTCAACCTCAAGCCCGGCGGATAGTTCGGATACTGTACCTCAGCGGGATAACGCAAGCTCTCCGATGAGCACGGAGAACTGGAATAAGGAGGATGCAAAGCAAGGAGGGGAAGAGAAGAAAGTGTCCGCTTCGGTGTCAACGGCTGCGGCCACTAGCAACAGTAGTAGTAGTAGCATCACAAGCACCGGCAGCCATTTGACCTTTAACCCCTTCCTAATCCCGGGAATGTCGCATAGTTTGTTGTATCCGCATATGTTCTTGCCACCAGGCAGTATAATGGCGCTGCCCGCTATGCCTGCAGCAGACAGCACGGGCAGCCCTAAGAGGAAGAGGAAGAAGGTCAGGGAGGAAGGACCGGTGGAGGGAAGTGGAAACGTTGGTGTGCAGATGGACGGCGAGGAATCGAAGGGGGTTAAAGTCGAACAGACACCCGAACGAAAGAGCCAAGAGGGCGGAATGGAAGAAGATGGACATGATGTAAATTTGGCTCTGGTCAAAGATCCTTCTGACCATATAAAAGATCCTTCTGAGGATAAAAGTACTGAAGAAAAGGAAAAAAACGAAATGGGAGAGGAACCTGAGCAAGATGCTCAAGGCCCATGTGATGGTGGAGACTAGAATGCATCCTCACGTTTGGGCCGCAGTACTTTTGTGTGTGTCGTGTCGGTAAAAGTTTGTGTATAGGACTTTGATTATCAATGTATTGTTTATAGATCTGCCCTTGTAATTTCACTGACATCTACTCTACCTTCTGGGTGTGTGCTAAAGAAATAGACACTTGAAGCATGCAAACGCTCAGAGGTCCTACAAAGGGACAACATCATCATTGGTGTTAGTGTGTTCCTTTTGCATCATGGGAATGGATACTCAGACGATTCTGTCTATTGACTGAGAACGCTCTTAGTGACCCCAGCATTTTTCCCCCCTCGATTAGGTGTTATTCACTAGCATCTTTCGCAGATTCTCAGAAAGTGGTAGGATGTTGGTATTGTGCAAAAAACAGACGGCAGTCTCAGTCCATAATGGTGGTTCGGATCATGCTCTTCTAGTTGCATAAGACCTAGATTCGTGTTTTGAAACATTTCTCAGAATAATGTAAAGGAAACACTCATCCCATTGGTAGATTACCAGCAGTGCTGCGTCTGATACATTCTTGATGGACCACAGTATTTTGTTCTTAGTTGCTTGCTGCTATGTATTCATTTTAGTGAAGATTTTAACCTAAATCTTTTACAAAGCTATAGATGGCATGAGTGCAACATGGTGAGTGCAATGGAAACTCAAAAAGAGCAAGGCTTGAAGTTGATGGCAAAGAACAATCCTGAGATTGAGTTATCTTTTGTTTTGTTTGTCTTACTGTTTTTGGTATCGTTTCCACATTGTCGCTTTGATAAGGGGCCCCCGTTGGGATAGTACTAATCATTTTTATAGATGGTTATATATACTTGGGGGCGCTGCAAGTCCAAGGGCGAAGTGTTAGTGCCATAGATGAGACTCTGTTCTAAAAGGTTTTGGTACAAGGGCGTACAAAATAAA

Function

symbol description
chd6 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Orthologous to human CHD6 (chromodomain helicase DNA binding protein 6).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K14436 CHD6; chromodomain-helicase-DNA-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_15334006_15357378.mRNA True 9096 mRNA 0.49 34 15333088 15357378

Neighbor

gene id symbol gene type direction distance location
CI01000340_15318569_15329407 RBL1 coding downstream 2585 15318532 ~ 15330503 (-)
CI01000340_15312803_15315594 NA coding downstream 17494 15312741 ~ 15315594 (-)
CI01000340_15035570_15229330 PTPRT coding downstream 103758 15035570 ~ 15229330 (-)
CI01000340_14910995_14919035 PIGU coding downstream 413731 14910599 ~ 14919357 (-)
CI01000340_14894726_14899916 OSGN1 coding downstream 433172 14893593 ~ 14899916 (-)
CI01000340_15418307_15418626 BLCAP.S, GM3852, BC10, BLCAP coding upstream 60453 15417772 ~ 15418667 (-)
CI01000340_15433393_15440042 PSMF1 coding upstream 75938 15433316 ~ 15440187 (-)
CI01000340_15549307_15555642 RIMS4 coding upstream 191097 15548475 ~ 15557779 (-)
CI01000340_15559928_15562340 NA coding upstream 202224 15559602 ~ 15562340 (-)
CI01000340_15614801_15623230 TOMM34 coding upstream 257349 15614727 ~ 15623456 (-)
G495450 NA non-coding downstream 38088 15294273 ~ 15295000 (-)
G494909 NA non-coding downstream 563874 14769004 ~ 14769214 (-)
G494854 NA non-coding downstream 576369 14754883 ~ 14756719 (-)
G494861 NA non-coding downstream 583648 14747970 ~ 14749440 (-)
G494867 NA non-coding downstream 588031 14743717 ~ 14745057 (-)
G495459 NA non-coding upstream 68271 15425649 ~ 15430109 (-)
G495415 NA non-coding upstream 73838 15431216 ~ 15431529 (-)
G495502 NA non-coding upstream 109684 15467062 ~ 15467329 (-)
G495504 NA non-coding upstream 115146 15472524 ~ 15472833 (-)
G494872 NA other downstream 774065 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 777920 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1012811 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 2659563 12577435 ~ 12625758 (-)
G493266 NA other downstream 3216188 12067177 ~ 12116900 (-)
G495475 NA other upstream 249363 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 814299 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 1157521 16514899 ~ 16518531 (-)
G496845 NA other upstream 1686345 17043723 ~ 17045688 (-)
G496853 NA other upstream 1820114 17177492 ~ 17242739 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033183 chd6 coding NC_007117.7 CM002890.2 51575924 ~ 51666739 (-)
bowfin (Amia calva) AMCG00007937 chd6 coding CM030123.1 CM030123.1 37553993 ~ 37574386 (+)