XLOC_013592


Basic Information

Item Value
gene id XLOC_013592
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 41542542 ~ 41544182 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027397
GTTGTTGTAGCTCATCTACTTCAAGTGCTCTTCTCCTCCTCCAACAGCAGCAGCGCCTCCTCGGGCCGGAGCTCCAGTGGTCTGCCCAGCCGAACGTTCTGCCGCGGCTGCCGGGCCAGAGAGCCCACCAGAGCCCCGATCACACCCTCAGACCTGCACTTTTTCATGTCAGGCACTTTCCACAACATAGGGGTGGATCCGCAGAAgctgatgtcaatcaaagtatcTCCTGTTGCCTGTTTCTCACTTTTAGTATCCATATCCTCCTTTACTTCCACACTTGATGATCGAGGCACCTTCATGACTGCTGGATCCCCATCCATTACTCCTCCAAAACACAGCTGGATGTCTCAACACATGACTCTCAGCAGCATACAAGCCGGACATCTGCTCTAAAAGGCATTTACTGATAAATTTAGGCGCATTAGAGTAAATGGCGATGAATATGGAATTTCTCTAAGTTCACTGCTTTTACGACCATATGCTATATGAAAACATGTACTGAAGGCACGcgtatttaacaaaaaaaaaactctacctCGTGGTCACGCTAACCTCGCGCTGCCTGTACATACATGTAAATTCTGTATTGATTTCGTCTGCTAAAAGAGTTTTGTTAAatgtaaataacaaacaaaaaaggtacAACATATACAAAATGATTCACCACGAGTGTTTTCTCTGCAACTTACTTCCCTTGCATCACA
>TCONS_00027398
CTCATTTTATGTTGTTGTAGCTCATCTACTTCAAGCAGCAGCGCCTCCTCGGGCCGGAGCTCCAGTGGTCTGCCCAGCCGAACGTTCTGCCGCGGCTGCCGGGCCAGAGAGCCCACCAGAGCCCCGATCACACCCTCAGACCTGCACTTTTTCATGTCAGGCACTTTCCACAACATAGGGGTGGATCCGCAGAAgctgatgtcaatcaaagtatcTCCTGTTGCCTGTTTCTCACTTTTAGTATCCATATCCTCCTTTACTTCCACACTTGATGATCGAGGCACCTTCATGACTGCTGGATCCCCATCCATTACTCCTCCAAAACACAGCTGGATGTCTCAACACATGACTCTCAGCAGCATACAAGCCGGACATCTGCTCTAAAAGGCATTTACTGATAAATTTAGGCGCATTAGAGTAAATGGCGATGAATATGGAATTTCTCTAAGTTCACTGCTTTTACGACCATATGCTATATGAAAACATGTACTGAAGGCACGcgtatttaacaaaaaaaaaactctacctCGTGGTCACGCTAACCTCGCGCTGCCTGTACATACATGTAAATTCTGTATTGATTTCGTCTGCTAAAAGAGTTTTGTTAAatgtaaataacaaacaaaaaaggtacAACATATACAAAATGATTCACCACGAGTGTTTTCTCTGCAACTTACTTCCCTTGCATCACA

Function

GO:

id name namespace
GO:0065003 protein-containing complex assembly biological_process
GO:0006413 translational initiation biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006457 protein folding biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002188 translation reinitiation biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043248 proteasome assembly biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027397 False 707 lncRNA 0.46 2 41542542 41544172
TCONS_00027398 True 695 lncRNA 0.45 2 41542542 41544182

Neighbor

gene id symbol gene type direction distance location
XLOC_013591 ptx3a coding downstream 167422 41364437 ~ 41375120 (-)
XLOC_013590 NA coding downstream 191059 41350989 ~ 41351483 (-)
XLOC_013589 NA coding downstream 197721 41343806 ~ 41344821 (-)
XLOC_013588 NA coding downstream 309614 41232314 ~ 41232928 (-)
XLOC_013587 fbxo36a coding downstream 310245 41226444 ~ 41232297 (-)
XLOC_013593 fzd9b coding upstream 104630 41648812 ~ 41650648 (-)
XLOC_013594 grk7b coding upstream 196560 41740742 ~ 41754020 (-)
XLOC_013595 rnf7 coding upstream 213081 41757263 ~ 41766098 (-)
XLOC_013596 arhgap42b coding upstream 313221 41857403 ~ 42071876 (-)
XLOC_013597 cntn5 coding upstream 606765 42150947 ~ 42395161 (-)
XLOC_013384 BX323829.1 misc downstream 22000311 19542102 ~ 19542231 (-)
XLOC_013575 NA non-coding downstream 1020018 40521492 ~ 40522524 (-)
XLOC_013574 NA non-coding downstream 1027463 40513030 ~ 40515079 (-)
XLOC_013598 NA non-coding upstream 916706 42460888 ~ 42606669 (-)
XLOC_013600 NA non-coding upstream 1313821 42858003 ~ 42859256 (-)
XLOC_013601 NA non-coding upstream 1903137 43447319 ~ 43450341 (-)
XLOC_013602 NA non-coding upstream 2045362 43589544 ~ 43592912 (-)
XLOC_013603 NA non-coding upstream 2071525 43615707 ~ 43647433 (-)

Expression


Co-expression Network