CI01000340_15723386_15729584 (FAM83C)


Basic Information

Item Value
gene id CI01000340_15723386_15729584
gene name FAM83C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15723110 ~ 15729978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_15723386_15729584.mRNA
AGCTTCAAGCTCATTGTTTCTGCCTTAAATTGATACATTGCTTAAATTACTACATTGTTAGCTAACTGTGATCTGTATACGTACATTTCTGAAATTACGTCATTTGGACAGTCACATCTGATATTAGATTACTCTAAATTGTTATGTTGACATGTATTTTCTGTAAAGCTGCTTTGAAATGATATGTATTGTGAAAAGAGCTATACAAATAAATGTGAATTGAATATATTTTATTTTTGATTAATCATTTATTTCCTTTTATATCTTTTATAATTTTATAATAATTATATAAAATAAAAAAAATAAAAGTTAATAAATAAACATTAATAATTACTTATATTATGTTTAGCGTTGGTTTCTATGTTAAAACGGCCTGCCATAGTTTTCTTTCCATATGACGTCAGAGGAGGTGGAGCAGCTGGCTGAACAGGGCAGCCGCAGATTAACACCAGTCGTGGAAATGATCAGTTCAGAGGCTTTGCGTCCGACCCCGAACCCTGCGCGTAAAGGGAAGCTCGCGTCCAGGCTGGAGGAGGTGAAGAACCCCTGGAGAACCGGATCAACACTCGAGCTCAGCCACAATGAAACCGCGCGGCTCGCCACCGACGCGCTCTTGGAACAGGGTGAGAAGGAGTATAAAAAAGTCTTGCATGACGAAAGAGAAGTAAACTTTTTGTCTTCGCTGGAAATACGCTATATCACCGAATATGTGGCCAAAAGTAGTGGCGCGGACAGCGGGATTAATGGAGTGGACATGGAGGAAGACACGATGTCAGAGCTCACTTCAGGGACTTATTTCCCCATGATGTCCGACGAGGAGCCTCCAATGTTGGAACTGGGCTGGCCAGAGGCTTCCAACCGATGTGGACCCACAGAAGCGCAGATATTCTTTCAGAGGGACAAGTCGCAAAATGTCAAAGATCTCATTCGATCACTTATTAGTAAAGCCAAGAAGGTTATTGCAATAGTCATGGATATTTTTACAGACGTGGACTTGTTCTGTGATTTAATGGAGGCCTCCAACAAGCGCCGGGTTCCTGTATATATTCTACTGGATGAGAAGAATCTCTCCCATTTCTTGAGCATGTGCTCAGAACTAGACATCCAGAATTCACACTTGAGTAATATGCGGATAAGAAGTGTATGTGGAGACACGTATTGCACCAAAAGTGGGAAGAAATTCTCAGGTCAGGTTCAAGAGAAATTCATGATCATTGACTGTGAGGAAGTCATAGCTGGATCCTATAGTTTTACATGGCTTTCCGCTCAGGTCCATAGCAACATGCTAATGCAGTTCTCCGGCCACATTACGGACTGCTTTGATCGTGAATTCCGCTGTATGTATGCAGATTCCCAAATAATAGACCGTTTCCACAATCCAGATGAAGATGATCTACCCGGCTACTCTTACAACATGCCAGCACCAAACTTTGGTTTGGACTTCCTTGCGAACTACAGCAGCAAGGAGAAAGTGTATTCTGAGAACTCCAGTAGCCAATCCAGTAGTAGCGTTTCCAGCATCAAAGCTGCTCCTCCAGGCATGAAACCTGTTTACAAAGTCACGCATGACAAGAAGAACCCGGACATCTCGCAAAAGACTCCTGACTGGAAAGAAGTCACAAATCCAGTGCTTCAAATGCCTCAAGGAACCCACATCAGAAGAGGTTCTCTTAACGACACCCACCAAAATCAGACGGTTCAGTCCGCTGGGGTGGAATGGGCCAAAGTCGGAGCAGCAGAATACCTACGCACAAACATTGCTGGACAGACATCCAAAATCCAGTCTTTTGGTCTCTACAGTTCTCCAAAACCTCCATCACCAACTCAACAATCTCCAACCGACAACAGGATCTCCCCAAAACATCGACTCCCTGCCCCCTTCCTCAGTAAGTTCACGGAGTTGTTCACCACAAAGGACAAGGACCTTCACCTCCTCCAGAAGAATCCTTCTCATTCTTCTCCGTTTGGTGGGCCAGATCTTTCTCAGAACGAGCCAGAGAGTAAGCAAGTTCCTCCTCCACCAGGCCCCATGCCAATAGACAGGATGGGCCCGGAGAAAGGGATACATCGGCGGGACGAGAAACGCATGACATTAGGTCACAGCAAATTAGACCTTGTCAACCATTACAACAAGTTGAACAAATCCAAGCAGGTATACAGTCGATTTGAGCTAAAGAACAACATGCCTCAGTAATGCTGGGCCTGATTGATCATTCTCTCTGGTCGACTCTTGTACATAGCTTTTATTGTGCAAAGGAATGTACTTTTCTTGGAGTGAGATTGTTGCTTTTTTTTTTTTTTTACACAAGACTAAAAAAATCAACTAGGAGTGAAAGGTGAGATGTGTGTTTTGAGTGAATTTACATTTTTAATGAATATTAAGTACTTGGTACTAATGCTGCTTTCAAGTTCTTCTGGGAAGTTCCTGGAATCCGTAATCGCGACATGAAGTGATTTTGGTCAGAATAAA

Function

symbol description
fam83c Orthologous to human FAM83C (family with sequence similarity 83 member C).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_15723386_15729584.mRNA True 2470 mRNA 0.43 5 15723110 15729978

Neighbor

gene id symbol gene type direction distance location
CI01000340_15677629_15704765 MMP24 coding downstream 16430 15677590 ~ 15706680 (-)
CI01000340_15666594_15673044 IF6, EIF6.S, EIF6 coding downstream 50066 15666460 ~ 15673044 (-)
CI01000340_15614801_15623230 TOMM34 coding downstream 99654 15614727 ~ 15623456 (-)
CI01000340_15559928_15562340 NA coding downstream 160770 15559602 ~ 15562340 (-)
CI01000340_15549307_15555642 RIMS4 coding downstream 165331 15548475 ~ 15557779 (-)
CI01000340_15741859_15763888 NA coding upstream 11379 15741357 ~ 15763888 (-)
CI01000340_15802368_15806754 GDF5 coding upstream 70915 15800893 ~ 15807394 (-)
CI01000340_15818649_15820582 NA coding upstream 87902 15817880 ~ 15820582 (-)
CI01000340_15843587_15847043 OSER1 coding upstream 113183 15843161 ~ 15847095 (-)
CI01000340_15863675_15876969 RBPJL coding upstream 133692 15863670 ~ 15876969 (-)
G495491 NA non-coding downstream 519 15721150 ~ 15722591 (-)
G495545 NA non-coding downstream 88373 15634516 ~ 15634737 (-)
G495485 NA non-coding downstream 99115 15613499 ~ 15623995 (-)
G495475 NA non-coding downstream 112610 15606741 ~ 15612563 (-)
G495539 NA non-coding downstream 135667 15587153 ~ 15587443 (-)
G495581 NA non-coding upstream 123710 15853688 ~ 15853903 (-)
G495582 NA non-coding upstream 125664 15855642 ~ 15857831 (-)
G495587 NA non-coding upstream 128981 15858959 ~ 15859189 (-)
G495588 NA non-coding upstream 129417 15859395 ~ 15859739 (-)
G495597 NA non-coding upstream 150327 15880305 ~ 15880509 (-)
G494872 NA other downstream 1164087 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1167942 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1402833 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 3049585 12577435 ~ 12625758 (-)
CI01000340_16175837_16177624 NA other upstream 441699 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 784921 16514899 ~ 16518531 (-)
G496845 NA other upstream 1313745 17043723 ~ 17045688 (-)
G496853 NA other upstream 1447514 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 2689340 18419058 ~ 18421201 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033191 fam83c coding NC_007117.7 CM002890.2 52468139 ~ 52484566 (-)