CI01000340_15741859_15763888


Basic Information

Item Value
gene id CI01000340_15741859_15763888
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15741357 ~ 15763888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_15741859_15763888.mRNA
TTACAATAATACTCTATTATTGTGACTTTAGCGGAATCATGTATCGGCGACCGCTGCAGTCCGCCGTCAGACAGTTATTAAACGCTTCAGCATCGAGAGCTGTCCTCGGAAAGGCCATTGAACAAGATGTGTGTCAGTCCAGGGCTTTGGTGGCTTGCCGGATAACAGCGGATGCTTGCGTCTCGCAATGTCGAGCTCTTCACAGCACAAGTGAGCTGCGTACTGTTAAAGAGACCCCACAGACTACAGATGAAGAGGTGGGGGCCTTCACCAAACTGATTGAGGCCATGGGCTTCACTGGACCCCTCAAATACAACAAATGGAAAATTAAGATAGCTGCCTTGCGAATGTACACATGCTGTGTAGAAAGAATCAACTACGACGAATTTTTTGAAAAGTGCTCTCTCCCCGACACGCTCAACTCCTGGTTCTTGGTGGCACAGCTCCACGTTTGGATGTGTCTGGTCCGGATGCGGCAGGAAGGCAGAGCTGGGAAGTACATGTGCCGTTACATCGTCCACTCCATGTGGGAGGATGTGGAGCAGAGGAGCAAGATTATGGGCGATGTAATTACTATGCTCTACAGACTGTGGAGGCATTTTGAGCTGAGCGGTGTCCAGCGGAGTAGCAAAAGGTGTTTAAATCTCTGCGAGGTGCTCTGTTCAGCCAGTAAGATTTTACAAGCTTATTATCAATTTAACATTGGAATTGCAATTGATGCCATTCAGAGAAAGGAGAGCATGAAGGTGATGACGGAGACATTCTACGCTGCACTTTTTGGTTATGACGAGGGAATTCTGTCAGACGATTGCGTTCTTGCGGCGGCGCTCTGGAGGAACATGTTTAACAGACAGTGTGAAGACCCCAGACAGCTCGAGATGATGGTTGAATATGTTCGCAAACAGGCATTCTGTGAAAAAGAAAGAAAAACAACAAATAAGCGTCATCCGAGTGTCAGGGGCCTGCTTAGCTCTGGATGGAGGGAGAAGCAGAAGGAGCGAATGCAGTTCATTGATGCTCTGGATGGGGAGGACCTGCTTTTAACAGGAGAAGTCAAATGGCGCCCCCTGGTGGAGGAGAATGCCCAGAGCATCCTGAAGGTTCCCACCCCCACCTACAATGATGCTGGTCTCTAAGAGCTGCCAATCAGGACACCATCTGCCAATCAGGAAGCAGTGCTCACCTGATTAGTCACACCCTCTTTATGTCGGAGTCTTTCTCTCCCTCTTCTTCCCTGACTTTTCCTTTCACCTTCCCCACTGGTTAGTCAGTTTCCCACGTCAACACAGTGTTGAGAACACAACAAACAAATGCGCACACGCACACACACACACACACACACATTTGTTCTCACGTGTATTGAGAGTATTAAGGACTCATCAGAATGGTTTTGACCTCTCCTTTTCTAAATCTATAGAGTATTCTTGTATTTATATATGTCTTTCCATACGGCTGCAATGTTGCAATATTTATAGGAATATTTCCTGGCTCTTTCACTGTATCTTTCCTCAGTGTTTACGGCGCGAATAGTTTTTTTTTTTTTATTATTATTTTACTCTCAATGTGTTGGAGGAAAATGTTTTGAGTGTGTGTGAATGTGAGTGTATTTTTTATTTGTCAGGGTCGTCCACCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_15741859_15763888.mRNA True 1638 mRNA 0.46 12 15741357 15763888

Neighbor

gene id symbol gene type direction distance location
CI01000340_15723386_15729584 FAM83C coding downstream 11379 15723110 ~ 15729978 (-)
CI01000340_15677629_15704765 MMP24 coding downstream 34677 15677590 ~ 15706680 (-)
CI01000340_15666594_15673044 IF6, EIF6.S, EIF6 coding downstream 68313 15666460 ~ 15673044 (-)
CI01000340_15614801_15623230 TOMM34 coding downstream 117901 15614727 ~ 15623456 (-)
CI01000340_15559928_15562340 NA coding downstream 179017 15559602 ~ 15562340 (-)
CI01000340_15802368_15806754 GDF5 coding upstream 37005 15800893 ~ 15807394 (-)
CI01000340_15818649_15820582 NA coding upstream 53992 15817880 ~ 15820582 (-)
CI01000340_15843587_15847043 OSER1 coding upstream 79273 15843161 ~ 15847095 (-)
CI01000340_15863675_15876969 RBPJL coding upstream 99782 15863670 ~ 15876969 (-)
CI01000340_16001904_16003536 FAM212AB coding upstream 237946 16001834 ~ 16003536 (-)
G495491 NA non-coding downstream 18766 15721150 ~ 15722591 (-)
G495545 NA non-coding downstream 106620 15634516 ~ 15634737 (-)
G495485 NA non-coding downstream 117362 15613499 ~ 15623995 (-)
G495475 NA non-coding downstream 130857 15606741 ~ 15612563 (-)
G495539 NA non-coding downstream 153914 15587153 ~ 15587443 (-)
G495581 NA non-coding upstream 89800 15853688 ~ 15853903 (-)
G495582 NA non-coding upstream 91754 15855642 ~ 15857831 (-)
G495587 NA non-coding upstream 95071 15858959 ~ 15859189 (-)
G495588 NA non-coding upstream 95507 15859395 ~ 15859739 (-)
G495597 NA non-coding upstream 116417 15880305 ~ 15880509 (-)
G494872 NA other downstream 1182334 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1186189 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1421080 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 3067832 12577435 ~ 12625758 (-)
CI01000340_16175837_16177624 NA other upstream 407789 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 751011 16514899 ~ 16518531 (-)
G496845 NA other upstream 1279835 17043723 ~ 17045688 (-)
G496853 NA other upstream 1413604 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 2655430 18419058 ~ 18421201 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033192 uqcc1 coding NC_007117.7 CM002890.2 52521467 ~ 52566574 (-)