CI01000340_16278246_16280290


Basic Information

Item Value
gene id CI01000340_16278246_16280290
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16278027 ~ 16280817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_16278246_16280290.mRNA
AGGTTAGATGATCTAAGTCCTGGTTTTAACTTTAATCATGACCTGCTGAAGATATTCTGATTATTAATGCTCTGGATTATATATGAAACTGCAACCAAAACAGTTTTAACTGGAGTCATCTTAAATTACCAGCTAAACTGAAAGGGATGCCAAACGGTTTTCCCATTTCCAATAGGTTATTTGTATCATATGTGTGTGTCTGCGTGTTCATGTCTCATTGAGGGGTATCGGAAAACCACAGTCTCTACGTTCGGCCCGACAACAGTTTATAATTGCATTTTAATAGACAATTAAAGGCAGGCCATAAATCAGTCCTCACTTGGCAGGAGGCTTGAATTTAATTTAACAAAAAAACAAAAAGCAAACAAACAGTGTTTACTATGTCAACCCCAATTAACCCGTGCCTCTCTATTACTGTACACCGTACTTCACCCTGCCATGAAGGCGATGGTTTGATTGTGAGATGAAGAATTGAAGAGAAGGAGAAAAAGATTAATGAACCACAGTGAGTGGAAAATGATTGAATAATGACAATTATTGCAGAAAAGCCAGATGATGATGATGGAGAAAACCTCTTGGAAAACCCAAACTCTCTCTCTTTGGAGTTTGTGGAGGACCCCAACTTCAAGAATAAAGTCAACTACTCATATACGGCTGTACAGATTCCTACTGACATCTACAAAGGCTGCTTATGGGTAATGGATGGTTGCTGGAAGATGAATGCTGGCAGAGTGTGATCAAACATTTGGACGTTGTTACTTTTGCTCTGCTGTAATACATAACCATCATGTATAGAGGCTCTCTGTATAGCAGGTCAGGGTCTCTTTGATGCACAACTTTTACGTTTCTTTGACCAAGAACAATTACATGGCTTACATGAGCAGGATTTGTGCAACTGTGAACAAAATACTGTGTTCTAGATGACTATTTGCCATAAAAACAAATGAATGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_16278246_16280290.mRNA True 956 mRNA 0.38 3 16278027 16280817

Neighbor

gene id symbol gene type direction distance location
CI01000340_16206491_16266692 CACNA2D2, CACNA2D2A coding downstream 11335 16206252 ~ 16266692 (-)
CI01000340_16184729_16192901 MST1L, MST1 coding downstream 85126 16184043 ~ 16192901 (-)
CI01000340_16175837_16177624 NA coding downstream 99713 16171677 ~ 16178314 (-)
CI01000340_16139895_16145747 NA coding downstream 131816 16139895 ~ 16146211 (-)
CI01000340_16117666_16121565 NA coding downstream 156006 16117358 ~ 16122021 (-)
CI01000340_16353966_16364847 NA coding upstream 72999 16353816 ~ 16364896 (-)
CI01000340_16408042_16409453 NA coding upstream 127168 16407985 ~ 16412936 (-)
CI01000340_16492560_16496822 NA coding upstream 211324 16492141 ~ 16497962 (-)
CI01000340_16502291_16507977 HYAL2, HYAL2A coding upstream 221110 16501927 ~ 16509948 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 coding upstream 234248 16514899 ~ 16518531 (-)
G495642 NA non-coding downstream 180826 16096190 ~ 16097201 (-)
CI01000340_16006372_16024582 GNAI2 non-coding downstream 249046 16006340 ~ 16027056 (-)
G495630 NA non-coding downstream 261892 16014324 ~ 16016135 (-)
G495622 NA non-coding downstream 298797 15969969 ~ 15979230 (-)
G495615 NA non-coding downstream 348649 15925410 ~ 15929378 (-)
G495668 NA non-coding upstream 5109 16285926 ~ 16286334 (-)
G495682 NA non-coding upstream 30389 16311206 ~ 16315130 (-)
G496641 NA non-coding upstream 178824 16459641 ~ 16459909 (-)
G496651 NA non-coding upstream 244729 16525546 ~ 16527155 (-)
G496658 NA non-coding upstream 298125 16578942 ~ 16579856 (-)
G495475 NA other downstream 665464 15606741 ~ 15612563 (-)
G494872 NA other downstream 1719004 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1722859 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1957750 14318365 ~ 14336258 (-)
G496845 NA other upstream 762906 17043723 ~ 17045688 (-)
G496853 NA other upstream 896675 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 2138501 18419058 ~ 18421201 (-)
G497442 NA other upstream 2878052 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033208 cacna2d2a coding NC_007117.7 CM002890.2 53503273 ~ 53885514 (-)