CI01000340_16515291_16518346 (TUSC2A, TUSC2)


Basic Information

Item Value
gene id CI01000340_16515291_16518346
gene name TUSC2A, TUSC2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16514899 ~ 16518531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_16515291_16518346.mRNA
ACAGAGCTAGCGCAACCACAGCAGTGCTTTGAAGCCACACCACAAGCCACACATGCCCAGTTACATTGCCATATGACTTCGCCTTTATGACAGAAGTCTGTAACATGCTCTCTGTTTTTCAGGACTGAACAGACATGATCTGCTGGCCGGTCCACCTCCTCTAAAATAATGCATCATCAATAAAAATGGGAGGCAGCGGATCCAAAACTAAAGGAGTCTGGCCTTTTACCAGCTCTGGAGCTGGAGGAGAAGCTCCCGGTGAGGTCAGTGAACAGTGTTTAGCGCGTCTCCGAGGCTCCAAGAATGCGACACCATTTGTCTTCACAAGGAGAAGCTCCTTGTATTTTGATGAAGATGGAGATCTAGCTCATGAGTTTTATGAGGAGACTGTGGTGACCAAGAACGGCAAAAAGAAAGCCAAGCTGAAAAGAATTCAGAAAAACCTCATACCTCAGGACGCCCCATGGCTCTCTGTTACGACAGGGAGGGCGTTTGCCCTTCAGCTGGCTTTGACCAAAAAGTTGAATCATATTTTCAGATTTTCATTCTGGTGTATAGACAGCAGACGTACGTCGCTCTGTCTTCTGTGATGTACAGTAAGGAACGCATGTGCAATGAGAGTGTGTAAGTAAGGAACAATGCAGGGATTGTACATAAATCACGTGTTTGTTATTGTGCGTGTTTATCATTCTATTGTATATTATAATATTCTGTTGTATCAAAGTCTGACTTTGTTTGTTTGTTGGGTTGCAAGCCACATCTGCACTTGTAATCGTTTATTGTACAGTAAATTATGAGTTAATATATTTGAATAAA

Function

symbol description
tusc2a Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to be active in mitochondrion. Orthologous to human TUSC2 (tumor suppressor 2, mitochondrial calcium regulator).
tusc2 Predicted to be involved in inflammatory response and regulation of mitochondrial membrane potential. Predicted to act upstream of or within several processes, including natural killer cell differentiation; neutrophil-mediated killing of gram-negative bacterium; and regulation of cytokine production. Predicted to be active in mitochondrion.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_16515291_16518346.mRNA False 816 mRNA 0.43 3 16515065 16518531

Neighbor

gene id symbol gene type direction distance location
CI01000340_16502291_16507977 HYAL2, HYAL2A coding downstream 5117 16501927 ~ 16509948 (-)
CI01000340_16492560_16496822 NA coding downstream 17103 16492141 ~ 16497962 (-)
CI01000340_16408042_16409453 NA coding downstream 102129 16407985 ~ 16412936 (-)
CI01000340_16353966_16364847 NA coding downstream 150169 16353816 ~ 16364896 (-)
CI01000340_16278246_16280290 NA coding downstream 234248 16278027 ~ 16280817 (-)
CI01000340_16540718_16544143 RPS10, RPS10-NUDT3, RPS10.L coding upstream 22187 16540718 ~ 16544143 (-)
CI01000340_16584213_16590736 SPDEF coding upstream 65450 16583981 ~ 16592930 (-)
CI01000340_16616356_16625161 C20H6ORF106, C26H6ORF106, C11H6ORF106, CLG3H6ORF106, CLG2H6ORF106, C23H6ORF106, CUNH6ORF106, C4H6ORF106 coding upstream 97024 16615555 ~ 16625161 (-)
CI01000340_16656861_16660297 NA coding upstream 137977 16656508 ~ 16660297 (-)
CI01000340_16661934_16665857 SYS1 coding upstream 143002 16661533 ~ 16666655 (-)
G496641 NA non-coding downstream 55156 16459641 ~ 16459909 (-)
G495682 NA non-coding downstream 199935 16311206 ~ 16315130 (-)
G495668 NA non-coding downstream 228731 16285926 ~ 16286334 (-)
G495642 NA non-coding downstream 417864 16096190 ~ 16097201 (-)
G495630 NA non-coding downstream 498930 16014324 ~ 16016135 (-)
G496651 NA non-coding upstream 7015 16525546 ~ 16527155 (-)
G496658 NA non-coding upstream 60411 16578942 ~ 16579856 (-)
G496659 NA non-coding upstream 61582 16580113 ~ 16580492 (-)
G496685 NA non-coding upstream 124093 16642624 ~ 16643141 (-)
G496698 NA non-coding upstream 176608 16695139 ~ 16695401 (-)
CI01000340_16175837_16177624 NA other downstream 334980 16171677 ~ 16178314 (-)
G495475 NA other downstream 902502 15606741 ~ 15612563 (-)
G494872 NA other downstream 1956042 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1959897 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 2194788 14318365 ~ 14336258 (-)
G496845 NA other upstream 525192 17043723 ~ 17045688 (-)
G496853 NA other upstream 658961 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1900787 18419058 ~ 18421201 (-)
G497442 NA other upstream 2640338 19158869 ~ 19166778 (-)
CI01000340_16006372_16024582 GNAI2 non-coding downstream 485918 16006340 ~ 16027056 (-)

Expression


Co-expression Network