CI01000340_16656861_16660297


Basic Information

Item Value
gene id CI01000340_16656861_16660297
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16656508 ~ 16660297 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_16656861_16660297.mRNA
ATCCTCTCCCAAACACGGGGTGGCGCCAGTGCACGCACGTGTTCGCGCAAACAAAGACGTAAACGGATTCTCATATTCTACATCCGGTGGTTTTCGCCCCGCGCTGTTCCGCTGTGAAGATGCCGAACCATCAGTCAGAAAGACACACTGCAGTGGACGTAAACATAAAGAAAATGTGAAAGATTATTATCAGAAATGGATGGAGGAGCAGGCTCAGAGTCTCATCGACAAAACAACGGCTGCCTTCCAGCAGGGTAAAATTCCACCCACCCCGTTCCCAGGAGCCCCTCCACCTGGCGGATCTCTGCTTCCTCATCCAAACATTAGCGGACCTCCGAGACCTGGCATGTTACCAGCTCCTCCAATGGGTGGTCCTCCTATGATGCCCATGATGGGTCCACCTCCTCATGGCATGATGCCTGGAGGACCAGGTCCAGGTATGCGTCCACCAATGGGCGGACCTATGCAAATGATGCCCGGGCCACACATGATGCGACCTCCTGCTCGGCCAATGATGCTGTCTGTTAGACCTGGTATGGTGCGACCTGATCGATAAAACCACGGTGCCATGATTTCCCATCCGACATCCATGGAAGACTCAGCCAAATATCTACACTGGTTTTACAGTCGATTGAAGATTTTTATAGTTAGTCCATTTGCGTTTTATGATGACTAATGCCTGTGGTTCAGGAAATGTTGGTTCGCTCGAGTGACTCGGATTATCACAAATTCCTGTAAAATTTAATGAACCTTCCATTGGCTTTCATTTCATATTTATGACAGACCAGAGGGCGTTACATAATGGGTTTGTGTATGATGTGCATTTATTACGTTGATGGTTGTTTTGTTTTTATTTACTGTTGGGATTATTTTCAGCATTCTGTTTTTCATGTATTTTGAGAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_16656861_16660297.mRNA True 909 mRNA 0.47 5 16656508 16660297

Neighbor

gene id symbol gene type direction distance location
CI01000340_16616356_16625161 C20H6ORF106, C26H6ORF106, C11H6ORF106, CLG3H6ORF106, CLG2H6ORF106, C23H6ORF106, CUNH6ORF106, C4H6ORF106 coding downstream 31347 16615555 ~ 16625161 (-)
CI01000340_16584213_16590736 SPDEF coding downstream 63578 16583981 ~ 16592930 (-)
CI01000340_16540718_16544143 RPS10, RPS10-NUDT3, RPS10.L coding downstream 112365 16540718 ~ 16544143 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 coding downstream 137977 16514899 ~ 16518531 (-)
CI01000340_16502291_16507977 HYAL2, HYAL2A coding downstream 146560 16501927 ~ 16509948 (-)
CI01000340_16661934_16665857 SYS1 coding upstream 1236 16661533 ~ 16666655 (-)
CI01000340_16672630_16676596 NA coding upstream 12258 16672555 ~ 16676622 (-)
CI01000340_16689196_16692384 NA coding upstream 28872 16689169 ~ 16693335 (-)
CI01000340_16835641_16841074 NA coding upstream 174953 16835250 ~ 16841074 (-)
CI01000340_16851655_16855749 TNNI1A, TNNI1B, TNNI1 coding upstream 191114 16851411 ~ 16855749 (-)
G496685 NA non-coding downstream 13367 16642624 ~ 16643141 (-)
G496659 NA non-coding downstream 76016 16580113 ~ 16580492 (-)
G496658 NA non-coding downstream 76652 16578942 ~ 16579856 (-)
G496651 NA non-coding downstream 129353 16525546 ~ 16527155 (-)
G496641 NA non-coding downstream 196599 16459641 ~ 16459909 (-)
G496698 NA non-coding upstream 34842 16695139 ~ 16695401 (-)
G496699 NA non-coding upstream 46431 16706728 ~ 16707060 (-)
G496671 NA non-coding upstream 51219 16711516 ~ 16712367 (-)
G496701 NA non-coding upstream 67006 16727303 ~ 16727528 (-)
G496705 NA non-coding upstream 72288 16732585 ~ 16732813 (-)
CI01000340_16175837_16177624 NA other downstream 476423 16171677 ~ 16178314 (-)
G495475 NA other downstream 1043945 15606741 ~ 15612563 (-)
G494872 NA other downstream 2097485 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 2101340 14546999 ~ 14552983 (-)
G496845 NA other upstream 383426 17043723 ~ 17045688 (-)
G496853 NA other upstream 517195 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1759021 18419058 ~ 18421201 (-)
G497442 NA other upstream 2498572 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033216 snrpc coding NC_007117.7 CM002890.2 54430413 ~ 54433995 (-)
bowfin (Amia calva) AMCG00013777 NA misc CM030125.1 CM030125.1 42650190 ~ 42661844 (+)