CI01000340_17146962_17186247


Basic Information

Item Value
gene id CI01000340_17146962_17186247
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17146445 ~ 17186492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_17146962_17186247.mRNA
ATTTTCAATATCTTTAGTAAGTTATGGCTGTGTGGCTGTTGGTGTCTGTTTTCCAGCGGTTAAGTTTTATGTAAATTCTGCCGAAATAATTCTTTCCCTGTCATCAAGTCAAAAGCTGGAAAAAAGATTGTGAGAAAGAAAGACATTATTGAGACCAGGACACAGACAGACAGTAAATCTGATTAGTATTCCTCTGACATCAGGCAAGAGGTGTCTCACATTAGCATGAAGAGAAGGATGTCAAAATGACAAATATGATCTGCTTCCCTTCGCCTGGATTCGCTGTGGTTTTCACAAGACGAGTGCTGCTCGTGTTTGGAGGGTCTGGGATTGGACTCCTTCAAGATCTAGTACTACAGGCTCCACGGATGGGCACGCTCATGGGCGTCTACCTGCCCTGCCTGCAGAACATCCTGGGCGTGATTCTGTTTCTCAGGATGACCTGGATGGTGGGCATCGGCGGGGTCATTGAAGCCTTCATCATCGTCCTCATGTGCTGCTCCACGACGATGCTCACTGCCATCTCCATGAGTGCCATCGCCACAAACGGCGTAGTGCCAGCTGGAGGCTCCTATTACATGATCTCTCGTTCTCTGGGCCCTGAGTTTGGAGGAGCTGTAGGCATCTGCTTCTACTTGGGCACCACCTATGCTGGAGCAATGTACATCCTGGGCTGCATCGAGATCCTGCTGGTGTACATTGTACCACAAGCGGCCATTTTTAAGATGGAAGGTCTGGAGGGAGCCGAGGCCGAATCCGCCATGCTGAACAACATGCGTATTTACGGCACGCTAGTGCTGAGTTTCATGGCCATCGTGGTGTTTGTAGGAGTGAAGTACGTGAACAAGCTGGCGCTCCTCTTCCTCGCCTGTGTCATCTGTTCGATTCTCGCCGTCTACGCTGGAGTGATCAAGACCGCCTTCGAGCCTCCAATCTTCCCGTATGTGCCTCGTGAATATTATAACCGCATTTATCAGAACCACACTTACGTCAGAAAAATCCTGTACACAGCAGTCATCGAGAGAGAAAACGCCACGGTCACCACCGAACTCTGGCGGCTCTTTTGCGACTCTGAGTTCCTGAACGCAACCTGCGACAGCTATTTCGCCAATAACAACGTCACAGAAATACAAGGCATCCCAGGTGTTATGAGTGGCACCCTGCGCGAGAACCTCTTTGGGAATTATATGGAAAAGGGTTCATTCATTGAGAAGTTGGGAATAACAGCTGTGGAGGAACCTGACTCCATCCCGACCAACACTAACCGCTATGTGCTCGCTGACATCACCAGTTTCTTTACCATGCTGGTGGGCATCTACTTCCCCTCCGTGACCGGGATCATGGCTGGATCAAACCGATCCGGTGATTTGCGGGATGCCCAGAAGTCCATTCCCGTCGGCACCATCCTGGCCATCACCACCACTTCCATCATCTGTATCTTTTCATACATGAACACACACATGTACAGCACTCCACCTGGGCTTCAGAGCTTGACCGGCGCTCCTCGTCTCCTACAGGCCATCGCACGAGACGGCATAGTGCCGTTCCTCAGGGTGTTTGGCCATGGAAAAGCAAACGGGGAGCCCACCTGGGCATTGCTCCTGACCGCTTGTATCTGTGAGAGTGGAATCCTCATCGCTTCTCTGGATAACGTCGCTCCGATTCTCTCCATGTTTTTCCTCATGTGCTACATGTTTGTGAATTTGGCCTGTGCTGTTCAAACTCTACTCAGAACGCCCAACTGGAGACCACGATTCAAGTTCTACCACTGGACTCTATCCTTCCTCGGCATGAGTCTTTGTCTCTCGCTCATGTTCATTTGTTCCTGGTACTATGCCATCGTTGCCATGGGGATCGCCGGCTGTATCTACAAGTATATCGAGTTCCGAGGACCTCAGATATTAGTCCTGGTCAGCATGGACTCTGAACTGAATGTGGAGCAGCCGCGTCTGCTGTCTCTGACCAGTCAGCTGAAGGCTGGGAAGGGTCTGACCATCGTGGGCGCAGCGCTGGAGGGAACTTACCTGGAGAACCTTCCTCAGGGGCAGCAGGCCGAACAGTCTCTGAGGAAGCTGATGGAGGCAGAGAAGGTGAAGGGTTTCTGTCAGGTTGTCATCTCCTCCAACATGAGGGATGCCACATCACACTTGGTACAGGCCGGAGGGTTGGGTGGTCTTCAACACAACACCGTTCTGGCCAGCTGGCCACGCAACTGGAAACAGGCCGAGGATCATCAGAGCTGGAGAAACTTCATTGAGCTGGTAAGAGAAACCACCGCTGCCAGTAAAGCCCTGCTGGTGCCCAAGAACATCTCGGCCTTCCCATCGAACGGAGAACGCTTCACAGAGGGTCACATTGACGTCTGGTGGATCGTACATGATGGAGGCATGCTGATGCTGCTCCCGTTCCTCCTCCGCCAGCACAAGGTTTGGAGGAAGTGCAAGATGCGCATCTTCACTGTGGCCCAGATGGACGACAACAGCATCCAGATGAAGAAGGACCTGACGACCTTCCTGTATCACCTGCGCATAGACGCCGCAGTGGAAGTGGTGGAGATGCATGACAGTGATATCTCAGCGTACACGTATGAGAAGACCCTGGTGATGGAGCAGCGATCTCAGATCCTGAAGCAGATTAACCTCACCAAGACTGAGCGTGAACGCGAGATCCAGAGCATCACTGACAGCTCTCGTGGGTCGATCCGTCGCAAGAACCCGGCCGCGGTCACAACCCAGCTGAGTGTGACTGAGGAACCTGCGGCCAGCAGCAAAGAGGAGAAACCAGAAGAGGAGGAACAGCTCATTCATGACAAGAGTACCAACCCGCCCACCCCGGCCACACCCCAGTCCCCCACCGCAGAGGCCGAGACGCCCGGCACGGCCGTTCAGATGACATGGACTGAAGCCAAGTGTGATGGAGAGCAGGCCAAACCTATAGGAGCCACCACACCAGAGGCCATCAAAGACTTCTTCAACATGAAACCAAACCAGTCCAATGTGAGGCGCATGCACACCGCACTCAGACTCAATGAAGTCATCATTAAGAAATCCCAGGAGGCCAAACTAGTCCTGCTCAACATGCCCGGACCACCAAAAAACAGAAGCGGCGACGAGAACTGTATCTTGATATATGCTATTATCATTTTTGCTTCTCTCATTTCCTTGACTTTCCATCAATCAGACATGGAATTCATGGAGGTTTTAACCGAAGGTCTCAACCGGGTCCTCCTTGTGCGAGGTGGAGGTCGCGAGGTCATCACCATCTACTCTTAAGAAACTAGTCGACGTCACCCCATCCCATTTGCCCCCCTTCCCCAGTGTGACCCAAGCAATATCCCAGAATTTCCTTCAGTCAACCAGCTTCATTTGTTCTACTGGTCTGCCAAGCTCTCACCGGCCAAACATCGCTCTTCTTGGCGCTACTCTCGTTAACACTTTACTGTTCAATGAAGTGCACTGTTGATGTCAGTGGGTATTTGTTCAATGCCCCCTCTGCTGTAGCTTTCCTGCATCATCTGTCAATCACTGCTCTCACCCAATCAGGAGAAGCGGGTGGGTTGGGCTTAATTTGTTTTTATTTATTTGTTTTAAAGAAGAGGATGAAATGTCAGTGAAGAAGGATTCAACATTCATAACTACGCCAGAGATGCTGTGAAATATTTCTGCTCTGATAGAGAACGATCTCCTGATAACCTTGGGAAAAGATTTTTTAATGGTTTGAACTCAATCCTTTTGGTCTGCAGCTTCGTTAAATGTGAAAAGATTAATAATGAGTTTATTCAAGAAAAAA

Function

GO: NA

KEGG:

id description
K14427 SLC12A4_6, KCC1_3; solute carrier family 12 (potassium/chloride transporter), member 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_17146962_17186247.mRNA True 3789 mRNA 0.51 21 17146445 17186492

Neighbor

gene id symbol gene type direction distance location
CI01000340_17122774_17130168 CTSA coding downstream 16277 17122396 ~ 17130168 (-)
CI01000340_17094196_17104831 PCIF1 coding downstream 39658 17093716 ~ 17106787 (-)
CI01000340_17078619_17088012 UBE2C coding downstream 58433 17078619 ~ 17088012 (-)
CI01000340_17053954_17065047 NA coding downstream 81398 17052377 ~ 17065047 (-)
CI01000340_16864476_16870042 CSRP1, CSRP1A, CSRP1B coding downstream 276403 16864476 ~ 16870042 (-)
CI01000340_17190713_17213327 NA coding upstream 3905 17190397 ~ 17213476 (-)
CI01000340_17245510_17257329 NA coding upstream 57868 17244360 ~ 17257631 (-)
CI01000340_17318768_17326504 CYP24A1 coding upstream 131608 17318100 ~ 17326544 (-)
CI01000340_17354694_17378496 EYA2 coding upstream 167762 17354254 ~ 17378496 (-)
CI01000340_17451836_17453987 NA coding upstream 264960 17451452 ~ 17455983 (-)
G496833 NA non-coding downstream 106799 17033136 ~ 17039646 (-)
G496829 NA non-coding downstream 153126 16993086 ~ 16993319 (-)
G496801 NA non-coding downstream 159911 16968356 ~ 16986534 (-)
G496827 NA non-coding downstream 175277 16970817 ~ 16971168 (-)
G496825 NA non-coding downstream 187904 16957968 ~ 16958541 (-)
G496854 NA non-coding upstream 11841 17198333 ~ 17199818 (-)
G496863 NA non-coding upstream 72192 17258684 ~ 17259144 (-)
G496925 NA non-coding upstream 283702 17470194 ~ 17470651 (-)
G496930 NA non-coding upstream 285065 17471557 ~ 17471761 (-)
G496932 NA non-coding upstream 303145 17489637 ~ 17489846 (-)
G496845 NA other downstream 100757 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 626471 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 966360 16171677 ~ 16178314 (-)
G495475 NA other downstream 1533882 15606741 ~ 15612563 (-)
G494872 NA other downstream 2587422 14557623 ~ 14559023 (-)
CI01000340_18419431_18419838 NA other upstream 1232826 18419058 ~ 18421201 (-)
G497442 NA other upstream 1972377 19158869 ~ 19166778 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033235 slc12a5a coding NC_007117.7 CM002890.2 55449300 ~ 55585423 (-)
bowfin (Amia calva) AMCG00008019 NA coding CM030123.1 CM030123.1 39592332 ~ 39628102 (-)