CI01000340_17190713_17213327


Basic Information

Item Value
gene id CI01000340_17190713_17213327
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17190397 ~ 17213476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_17190713_17213327.mRNA
ACTCTGAGGTGAAACAATAGACCTGCCTTAACAGAGGCTTCAGGTATTGGCAGGAGGAAGCGGTTCGGTTTGATGTGAGCGCTCGAGTTCATTCACATATGCAGCAGCGACGGCTCCCTTTGTCATTCCCTGCTGGAGTGAACGAGAGAATGAGACCAGAGACCAGGACTGTGGAGATAAGCCCAGCTTCTGAGAGCCGCTTGATTACCACAAAGACCCTAGTGAATATTGAGAACGTGGTCAACACCACCTGTCCACCCAAGAAAGAGCGGATCTCACGCTTCTTCTCGTTTGTCTTTTTCACACTTTTTCCATCACTCTTTGAGAGGGGAAAATTGAAGAGAGTCAGAGATAGACTTGTGTCATCGGCTGAGAAGAGCAATCGCTGTTACCCGCGACAGGCTGAAGCAGAGGTCAACGTCCTTCAGATGCACGCGGTTCTCCTCGGCCGGTCACCGCAGCGGCACATCTTATTAACACTCACAGACGCTGTTACTCTGAACGGCGGCGCACAAACCCCAGAGATGTTTGGACAGATTTGTGCTTTAGTGCTCCTCCAGAACCAGAGATTCTCTCTGGTGCTTTACCAAATGAGAGGAAAGATCAAACTGGTCTGGGATCAGCAGTCAAGGGCAACAGATGGCGGGTCTGCTGTGCGCCGAGATGGGAACCCCAAGGAGAGCAGTCCATTCATCAACAGCACCGACCCAGAGAAGAACCAGCAGTATGACGGCAAGAACATGGCCCTGTTTGAGGAGGAAATGGACACAATTCCCATGGTATCGTCCCTTCTCAGCAGTCTCGCCAACTACTCAAACCTGCCGCAGGGCAGCAAAGAACATGAGGAGGCGGAAAACAACGAGGGCTCGCGCAAGAAACCTGTCCAGAGGAATCCATTATCTGGCAGTTTCACATGTCGTTCTTGCAGCTGGGCAGGTGGTGACGAGCACACAGGGTGCTGTGGCGTCCGCGCCGGCTTTATAGCCGCAGTGGGAGTGAGACACCTGAGGCTCTCAGCCGGGGTCCTCCGACGCCTGTCCCATCTGCTCTCTGCTGCCTTTACCTGAGATTCTCGCCGGCTGGAAGCCACCCGTGGGAAATCATAAACACACACATATACACACGGGACCAAAGAGGTTTGATTATGCACCTGCTCCAGTAAACTGAGCACAGCTACACTCTGATGGAGTCTATGGGTCGAAGAGTGACCGCTGCCAAACGCTGTGATTCAGACGTTCACACTCGCTTGACATGCCACCGCAGCTTCGATAATGAGAACTCATTTTAACCCGCATGGTGTCGATGTGACACTTTTGACTAACTGACACACCCTGAGCCTGCCAGATACAGAAATATCGCAGACAGATATCTCACACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_17190713_17213327.mRNA True 1383 mRNA 0.52 8 17190397 17213476

Neighbor

gene id symbol gene type direction distance location
CI01000340_17146962_17186247 NA coding downstream 3905 17146445 ~ 17186492 (-)
CI01000340_17122774_17130168 CTSA coding downstream 60229 17122396 ~ 17130168 (-)
CI01000340_17094196_17104831 PCIF1 coding downstream 83610 17093716 ~ 17106787 (-)
CI01000340_17078619_17088012 UBE2C coding downstream 102385 17078619 ~ 17088012 (-)
CI01000340_17053954_17065047 NA coding downstream 125350 17052377 ~ 17065047 (-)
CI01000340_17245510_17257329 NA coding upstream 30884 17244360 ~ 17257631 (-)
CI01000340_17318768_17326504 CYP24A1 coding upstream 104624 17318100 ~ 17326544 (-)
CI01000340_17354694_17378496 EYA2 coding upstream 140778 17354254 ~ 17378496 (-)
CI01000340_17451836_17453987 NA coding upstream 237976 17451452 ~ 17455983 (-)
CI01000340_17668871_17688583 NA coding upstream 454979 17668455 ~ 17689161 (-)
G496833 NA non-coding downstream 150751 17033136 ~ 17039646 (-)
G496829 NA non-coding downstream 197078 16993086 ~ 16993319 (-)
G496801 NA non-coding downstream 203863 16968356 ~ 16986534 (-)
G496827 NA non-coding downstream 219229 16970817 ~ 16971168 (-)
G496825 NA non-coding downstream 231856 16957968 ~ 16958541 (-)
G496863 NA non-coding upstream 45208 17258684 ~ 17259144 (-)
G496925 NA non-coding upstream 256718 17470194 ~ 17470651 (-)
G496930 NA non-coding upstream 258081 17471557 ~ 17471761 (-)
G496932 NA non-coding upstream 276161 17489637 ~ 17489846 (-)
G496950 NA non-coding upstream 311406 17524882 ~ 17596164 (-)
G496845 NA other downstream 144709 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 670423 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 1010312 16171677 ~ 16178314 (-)
G495475 NA other downstream 1577834 15606741 ~ 15612563 (-)
G494872 NA other downstream 2631374 14557623 ~ 14559023 (-)
CI01000340_18419431_18419838 NA other upstream 1205842 18419058 ~ 18421201 (-)
G497442 NA other upstream 1945393 19158869 ~ 19166778 (-)

Expression


Co-expression Network