CI01000340_18419431_18419838


Basic Information

Item Value
gene id CI01000340_18419431_18419838
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18419058 ~ 18421201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_18419431_18419838.mRNA
AGCAAAAAGTCATACAGACGCATATTCTGTTGCTGAACAATCCCATGAAACATCTGTAACTGCATGAGATGCACAACAAAAGACAGATCTTTGAGCTAAACATCCTCCATACTAACTCAATTCAGCGTGACAGGGTTCTCTACTAAACACAGCTATTAAAATGATATAAGCAACCAGAAGGAAATCAGTAAAATGCATGAATGCACAACAAAAGTGCAGCAGATAACAGTTATTTTTCATGTACCAGCCCTTTCCCATGAAGAACAAGAGCCCTACACAGAATGATTCATTGCAGTATAAAGGGTTCTTTGGGCAGATATTATTCAAATAAACAAAGCTTTTTAAACTATCAGAAATAAAAGTCACATTAGAAAAAACACTGAGCCTCAATACAATGATCCAGACATCTTTGGGCAGATATGGTTTTAAACTGAAGCATTAACGCCATTAAAAAGCTTTAAAGAATTCTTAATAATATAATAAGCAACCAGAAGGAAAATGCATAAATTTCTATTGCCAAAACAAGTAATTATGCATGAAATGCACATCAAAAGTGCAGCAGAAAACACTTATTTGTCGTGTTTCACTCTAAAAAATGCTGAGTTAAAAACAACCCAAGTTGGGTTAATAAAAAATGGACAAACCCAGAGATTGGGTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTGCCCCAAACATATTTAACTCAACTATTGTTTAAAAATGACTATATGTCTGGCTTAAAATGAACCCAAAATATGTTGGAAATTAAAAATCAGACACATAATTACTAGAGGAAACAATAATAATCAGAAGGTGAACATTTATTAATAAGCAATTCATTAAATGTTTATGTTTAATTATTATTCATTAAACATTAATAAATGGTAATTTCCAACATACTTTGGGTTCATTTTATGCAAGTAATATAGTCATTTATAAACAATAATTGAGTAAATAAAACTACCCAGCAGATTGGTCAAACATTTAACCCAACCACTGGGTTTGTCCATTTTCAACCCAACTTGGGTTGTTTTTAACCCATCATTTTTAGAGTGTAGTATTCATATAAACAAATCTTTAAACAACCGGAAGAAGAGTCCCATCATCATCTATTACCAGAAGAATCCCGCCACTCTGTAAACATGTTAAACATGAAGCGCTTTTCCACAAGGAACAGTTTATTCAGCCTCAACACTAAACAACCCATTAAAGGGTTTTTGGGTAGATATGGCTCTAGACTGAACTATTCATATTAAAGAAGCTCCAGTGAAGCTTTTGTTCGAGTGATATACAGCTCGAACAATCCTGCCACCCTGTAAACATCCTGTCAAGTGCGCGAACAAAAGCGCGTGAGGAGAAGATGACAGAGAGAAGCTCTTTCAGAAGCTCTTTGTTTTGGTGGTTCCAGCAGCAGAAGAACACAGTGTTATACTCACACGTAAGCGTGGTAGATGAACGCCCATCCGCGCGGTCTCTCCAGCACATTGTAGAGGAAATTCTGCAGGCGTCGGTAGAACGCGTTGCGCTTCGGCGGCCTCTTCCCGGAGATGCTGGAGCGCTGTTTGCTCAAGATGCTGCCGCGCTTCGTCGCCTCCGCGCCCGCGATCAGCAGCGCGCCGTCTCGGCTCGATTCCGTCGCGCCCGCCTCCAGTCCCACGAAGCCCACCTTCAGCTTCTTCTCGGCCTGCGGGGCGGGATACACGCCACCGTTGCGGGATTTCTGCACCATGCTGGAAGTGCTGTCGTCATGGAGATCCGCTGCTGCTGATGCTGCGGGTCTTCCGCCCTTCGCCAGGTGCGAGCATCACTGCGCGCGAGAGGTGCGCGGCGCTGAGGGCGCGCGGAGGAACAAGAAGCCAATAGCGATGCGAAGACGATCTGCAGTCTCTCTCTCTCTCACTCACTCACTCTCTCTCTCTCTCTCCACACACACACACACACACACAGGTTAGAGCTTGTTTTGGTGTTGAGAAGGAAATGAGACCTGTAGTAAGACCAGCACAGCATCTTTGGCGGGTTTAACATTTTCCCCAAATTGATTATTTGTTTTTGTGCCAAAAAAAAAATGAGAATATGTATGATGAGGAAACATCATCGTACATATTCCCAGGGTCGACCCTTTTGGTTTGAGCAAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_18419431_18419838.mRNA False 2144 mRNA 0.42 1 18419058 18421201

Neighbor

gene id symbol gene type direction distance location
CI01000340_18408556_18408855 NA coding downstream 10203 18408522 ~ 18408855 (-)
CI01000340_18302048_18303998 NA coding downstream 115010 18301388 ~ 18304048 (-)
CI01000340_18228042_18229807 NA coding downstream 189251 18227175 ~ 18229807 (-)
CI01000340_18185156_18206837 NA coding downstream 212221 18184910 ~ 18206837 (-)
CI01000340_18091595_18104080 CBFA2T2 coding downstream 314978 18090808 ~ 18104080 (-)
CI01000340_18482872_18484601 NA coding upstream 60148 18481349 ~ 18485055 (-)
CI01000340_18485385_18491222 NA coding upstream 63646 18484847 ~ 18491593 (-)
CI01000340_18540426_18543271 SLC32A1.S, SLC32A1, VIAAT coding upstream 119060 18540261 ~ 18544300 (-)
CI01000340_18572454_18585230 NA coding upstream 151253 18572454 ~ 18585230 (-)
CI01000340_18587476_18607063 NA coding upstream 166129 18587330 ~ 18607133 (-)
G497177 NA non-coding downstream 28 18418753 ~ 18419030 (-)
G497173 NA non-coding downstream 4351 18414473 ~ 18414707 (-)
G497171 NA non-coding downstream 7486 18411280 ~ 18411572 (-)
G497130 NA non-coding downstream 67254 18298469 ~ 18351804 (-)
G497044 NA non-coding downstream 252120 18162350 ~ 18166938 (-)
G497200 NA non-coding upstream 107126 18528327 ~ 18530628 (-)
G497209 NA non-coding upstream 125751 18546952 ~ 18547397 (-)
G497251 NA non-coding upstream 224296 18645497 ~ 18646467 (-)
G496853 NA other downstream 1176319 17177492 ~ 17242739 (-)
G496845 NA other downstream 1373370 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1899084 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 2238973 16171677 ~ 16178314 (-)
G495475 NA other downstream 2806495 15606741 ~ 15612563 (-)
G497442 NA other upstream 737668 19158869 ~ 19166778 (-)

Expression


Co-expression Network