CI01000340_18482872_18484601



Basic Information


Item Value
gene id CI01000340_18482872_18484601
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18481349 ~ 18485055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000340_18482872_18484601.mRNA
AGCCGTGGCGTGACGTCTTCCCTTTACAGAGATGCCCGTTTTGTGCCCTCTTGAGATGCCAGTGTGTCACACGCCCCAGTCAGCCAATCAGGCGGCCGTTGACAGGAAGTGACATTGTATGCATGATGATGATGATGATGATGATAACGGAGAGAGTTGCAATATACCGACTTTTGGCCTTTTGATAATGTAGTTTAGCGCAGATTAAATATGTACTAGTTGTTTTCATGTTATTGTTGCTTCTCGTTTAAAGGTCATTTTTTTTTGTTCGCTCACATGCATTAAACAAACAGCGGATTTGTAAGTGATGTTAACTTCAGTTTCGTTCGTTCAGACCCTCGTGACGTGTGCCTTCAGTTGTGTGTCATTTTGTTGCCTTCATATTTGAATCTTCCCTTCTGCAGTTAAGAAAACGTTTGATGCACGTTTGATTTGGTGAAAGTTTACGCCCAAGATGACGGGGACGTCTGCTCATCTTCATGTTGCTTTAAGTTGGTGTTTCTCCATTCGGATGAACGCTCACGTTGATTTTCGAACTCTTAATCTAATAACTGAAGGCCTTCCATGTGAAAAGAGGCATTTCCAAAGAAGGACTTTCTATCCAAGCCTTTGCGAGGGGGTCAGAACGACTGGACTAAAGCTCTTATCTTGTGTTTTTCTCCTCTGTTGGCATTGCTTTGGGTTTGAACATGCCATTGAACGCTTTAGAGAATCCAGCTGTTGCGAATGGAAAGCATCTGCAGTGCTTCTTCTGCTTCTCATTCGGCGTTCAGATATCCACATGTGTTATTTTGCATTGCAAGAAATAGACATTTCTATAGCAGAATCATCTCTTTCCTCTGTGTTCAGACTCTCCTCCGAGTTCAAGCACACATTAAACCTCATTCCCTGGAGAAAATGGACTGCCTTTCTGAAGAACACTCTCACCATCCATTCAATGCATCTGCGGCTTGACCTCCAGACCCTTCCGGCAATATCCGACTCCAGTCACAGAGAGCAACATCAGGACATCTGCATTCACGGTCTTCAGCATCCATCATGATATCCCTCTCACTTTTGATAATGACACTGCAGGTCATGATAAATGTGATGTTTTATCTCTCACACACACACTCTTTACTCATACATTTTGCATGATGTTCTGTGTGTGCATGAGTGTGCAGAGGCTGCTAATGGACCAACTACATTACATTCATGACAAGTTTTCTCTTTCATGTATATTGATTCAATAATAGGGTGAAACTCACAAAAGTTAGAATTCAAATTTCCTGATAATTTGTCTTTCTTTCTCCAGTCGAAAAGAAATGAAGGTTTTTGAGAAAAACATTCCAGGATTTTTCTCCATAGAGTGGACTTCACTGGGGTTCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGAGCTCTACATGATCCCAGACGAGGAATAAGAGTCTAGAGAAATTGGCCATTTTCTAAAAAAATAAACATACTTTTTAAGCACAAATGCTCATCTTGCACTGCTCTGTGATGCGCCATGCATTACATAATCATGTTGGAAAGGTCACGCGTGACGTAGGCGGAAGTACCGATCCAGTGTTTACAAAGCGAACGTGCAAAGACTAAGTCGAGCAGCCTTTACAAAAAAAGGTAAAACAACGATGTCGGACGATTTTGAAGTTGGAGGAGAAAATGAGATGTACCAGAGTACTTCCGCCTACGTCACGCGTGACCTTTCCAACATGATTACGTAATGCATGGAGCATCGCAGAGCAGAGCAAGACAAGCATTTGTGGTTAAAAAGTATATAGTTTTTGTTTTTTTAGAAAATGGCCGATGGTTTCTCTAGATAAGACTCTTATTCCTCGTCTGGGATCGTGTTGAAGCTGCACTGAAACTGACATTTGGAACTTCAACCCGTTGAACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTCATTTCTTTTCAACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGAGGTGAGTAAATTATCAGGAAACTTGAATTCTGAAGTGAACTAATCCTTTTCAGGTCAGAAAAATCAAACTCAGTTTCAGAAGGTGTCATGACACCCAAACACACTCAAACAAGCAGCAAATTAAAAAGGACAGGGTGAAATTATATAACGAGGTTTTATCACATAAGAAATCAAGAGAAGCCAAAGAACAATGACCATTCTGACTGATCCAGAATCAGGCCAGTGCATAAACCAAAAACGAATTAATCTATCAGGCCTATATTCTGTGTGCAAAATACTATTCTTTTAAAATAAAGCTGCTTTGGAATGATATATTGTGAACAGCCCAATACAAACACATGCATTTGTGATGAAAGACATGAACGATATCTGAACATTCTGAGATACAAAGTTTATTGTACATTTGCCCATGAGCTCATGGATTTGAGTGACTACACGACGGATATGCTACATAATAATCAAAAGCTTTATATATAATATGGCATTTTTAGCGGTTCAGAACATGCCGGCAAGCATTTGCTTCTCTAGAGAAGAAAAATAAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000340_18482872_18484601.mRNA False 2565 mRNA 0.40 2 18481349 18485055

Neighbor


gene id symbol gene type direction distance location
CI01000340_18419431_18419838 NA coding downstream 60148 18419058 ~ 18421201 (-)
CI01000340_18408556_18408855 NA coding downstream 72494 18408522 ~ 18408855 (-)
CI01000340_18302048_18303998 NA coding downstream 177301 18301388 ~ 18304048 (-)
CI01000340_18228042_18229807 NA coding downstream 251542 18227175 ~ 18229807 (-)
CI01000340_18185156_18206837 NA coding downstream 274512 18184910 ~ 18206837 (-)
CI01000340_18540426_18543271 SLC32A1.S, SLC32A1, VIAAT coding upstream 55206 18540261 ~ 18544300 (-)
CI01000340_18572454_18585230 NA coding upstream 87399 18572454 ~ 18585230 (-)
CI01000340_18587476_18607063 NA coding upstream 102275 18587330 ~ 18607133 (-)
CI01000340_18654497_18656059 NA coding upstream 169395 18654450 ~ 18656059 (-)
CI01000340_18706881_18719031 NA coding upstream 221016 18706071 ~ 18719031 (-)
G497177 NA non-coding downstream 62319 18418753 ~ 18419030 (-)
G497173 NA non-coding downstream 66642 18414473 ~ 18414707 (-)
G497171 NA non-coding downstream 69777 18411280 ~ 18411572 (-)
G497130 NA non-coding downstream 129545 18298469 ~ 18351804 (-)
G497044 NA non-coding downstream 314411 18162350 ~ 18166938 (-)
G497200 NA non-coding upstream 43272 18528327 ~ 18530628 (-)
G497209 NA non-coding upstream 61897 18546952 ~ 18547397 (-)
G497251 NA non-coding upstream 160442 18645497 ~ 18646467 (-)
G497252 NA non-coding upstream 162727 18647782 ~ 18712131 (-)
G496853 NA other downstream 1238610 17177492 ~ 17242739 (-)
G496845 NA other downstream 1435661 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1961375 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 2301264 16171677 ~ 16178314 (-)
G497442 NA other upstream 673814 19158869 ~ 19166778 (-)
CI01000340_18485385_18491222 NA coding upstream 3375 18484847 ~ 18491593 (-)

Expression



Co-expression Network