CI01000340_19280383_19285904


Basic Information

Item Value
gene id CI01000340_19280383_19285904
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19280228 ~ 19285904 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_19280383_19285904.mRNA
GTGTGATGAAACTGGATTTTCAGTGTGTGAAAAACAACACTGATCATCACACAAATGAAATCACGGTGGAGCGTCTGATCATCCGCAGAGGAAAAGCCTTCAGTCTGATCCTCAGCGGCGAGCGTCTGCCTCCAGACGACATCGAGATGACTGTGGAGACGGGTCCGGGCGCGAGTGAACAGAAGTGCACACGCTCGTCCTTCAGCACTAACCCGCAGCGCTGCTCTACTCCCGACGCCTGCATCGGCCTGTACTCGCTGTCGGTCAGGAGCGGCTCCTGCTCCATCCGGTGTGAGAGAGCCATCACGGTGCTGTTCAACCCCTGGTGTGAAGATGACTGGGTGTATCTGCCGAACGAAGCGGAGAGGCAGGAATACGTCATGAATGAACAGGGAATCGTGTATAAGGGAGTGGATGAATACATCACCAGCATGAGCTGGGACTTCGGTCAGTTTGAGGAAGATATAGTGGATATCTGTCTGACGATGCTGGATTTGAACCCGAAGTGTCTGAAAGACGCACAGGAGGATTATTCGGCGCGCTGTAACCCCATCTACATCGGTCGAGTGGTCAGCGCCATGATAAACTCAGACGATGATAAGGGTGTTCTGATGGGTCAGTGGGGCGATCGGTACATCGGAGGAGTCGTTCCGTCCAACTGGAGCAGCAGTGTGGAAATATTGAGACGCTGGATCAAATATGACTGTCATCCGGTCAAATACGGACAGTGCTGGGTGTTTGCAGCGGTCATGTGCACAGTGTTGAGATGTTTGGGGATCCCGTGTCGCGTCGTCACTAACTTTCAGTCGGCTCACGACACGGATCAGAACCTCATCATTGACGAGTACTTCAGCGACTACGGCGTGAGACCCAAACAAAACCTGGACAGTGTTTGGAACTACCATGTTTGGGTGGAGGGCTGGATGAGGCGTCCGGATCTCTCCAAGGACTCGTTCTACGACGGCTGGCAGGTTCTGGACCCGACGCCGCAGGAGAAGAGCTCAGGCACTTACTGCTGCGGTCCAGCGCCTGTGAAGGCCATCCTGGAGGGTCACACCGACGTCAAGTACGACGTGCCTTTTGTGTACTCAGAGGTCAACGCAGATAAAATCACATGGTTGGTCATGGCCAACGGCTCCAAGAAGATTATTCACTCAGACACGAAAACTGTCGGGCAGAATATCAGCACTAAAGCCGTGGGCAGCAACAGCAGACAAGACATCACAAATCAGTACAAGCACCCGGAGGGTTCTGTGAAGGAGAGAGCCGTGTATGACGAGGCCGTGAAGCGAGTGACTGACCTGAAGCCGAGCGAGACGCCTCGTCCAACCCTACAGATGAAGATCAGTCTGGACGAGCCGCCGCTGAACGGCACCGACATCAAACTCAAGCTCATTCTGAAGAGCGAGAGCGCACAAGATCTGTCGCTCAAGATGAGCGCTCAGGTCATGAGATACACGGGAAGCCCAGTGGCCGGCGTCTGGAGCGACTCCACTGACATCCAACTGCAACCCAACACAGAACAAATTCTTCCCTTCATGGTCCCGTTCGCTGCATACGGACCAAAAATGCTGGACAACAACTGCATCAAAGTGTCTGTGATCTCAACGGGAAAAAACGAGCCGAAAGAGACGTATCTGGCGGAGAAAGACATCGTGCCACACAGCCCGACCCTCAAGATCTCTGTGAGCGGGACTCCTCTATGGGACGCTGAGATGAACGCAGAGGTCGTGTTTGAGAACCCTCTCCCCACGGTGCTGAAGAACTGCTCCATCACGCTCACCGGCAGCGGCCTGCTGAAACAAACCGAGAAGTCCAACGCCGTTGAGCTCGGCCCGGGACAGAGAATCACTCTGAGGGTGACGTTCAGACCCTACAGACTCGGACCGAGGAAACTGGTGGCCAACTTTGACAGCTCCACCTTCAAAGACATTAAAGCCAGTCTGGACATCAACGTCAGACCCGCGAGCTCACCTCTGGGATACCTCAACTTCAGCAAATGAGACGACTGGGAAGAACGAAGAATCAGCTGCACGAAGCTTTTATTTGCATGAACAGCAGCCATGTACAACACAGAGATGTTCTATCATTTAAAGAGCTCATTTGTGCTGTTATAATGAAAATAATTAACAGTAATCTAATGATTATCACCATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_19280383_19285904.mRNA True 2158 mRNA 0.53 13 19280228 19285904

Neighbor

gene id symbol gene type direction distance location
CI01000340_19267148_19271146 PCK1 coding downstream 9082 19266637 ~ 19271146 (-)
CI01000340_19254583_19259959 ARFRP1, ARFRP1.L, ARFRP coding downstream 20269 19254226 ~ 19259959 (-)
CI01000340_19247600_19253297 STMN3 coding downstream 26931 19247473 ~ 19253297 (-)
CI01000340_19231651_19244239 HELZ2 coding downstream 35264 19230891 ~ 19244964 (-)
CI01000340_19213032_19215967 SP7 coding downstream 63608 19212361 ~ 19216620 (-)
CI01000340_19288790_19292748 GPR180 coding upstream 2192 19288096 ~ 19293397 (-)
CI01000340_19323506_19324456 NA coding upstream 37602 19323506 ~ 19325011 (-)
CI01000340_19326355_19328820 NA coding upstream 39730 19325634 ~ 19329321 (-)
CI01000340_19335733_19340791 NA coding upstream 49750 19335654 ~ 19340791 (-)
CI01000340_19346357_19355278 NA coding upstream 60000 19345904 ~ 19355278 (-)
G497444 NA non-coding downstream 111853 19168075 ~ 19168375 (-)
G497442 NA non-coding downstream 113450 19158869 ~ 19166778 (-)
G497440 NA non-coding downstream 124971 19154833 ~ 19155257 (-)
G497393 NA non-coding downstream 192600 19086428 ~ 19087628 (-)
G497288 NA non-coding downstream 313718 18915346 ~ 18966510 (-)
G497343 NA non-coding upstream 20339 19306243 ~ 19363326 (-)
G497375 NA non-coding upstream 129549 19415453 ~ 19420039 (-)
G497341 NA non-coding upstream 143457 19429361 ~ 19431737 (-)
G497350 NA non-coding upstream 162535 19448439 ~ 19451285 (-)
G497351 NA non-coding upstream 206020 19491924 ~ 19494481 (-)
CI01000340_18419431_18419838 NA other downstream 825548 18419058 ~ 18421201 (-)
G496853 NA other downstream 2037489 17177492 ~ 17242739 (-)
G496845 NA other downstream 2234540 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 2760254 16514899 ~ 16518531 (-)

Expression


Co-expression Network