CI01000340_19326355_19328820


Basic Information

Item Value
gene id CI01000340_19326355_19328820
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19325634 ~ 19329321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_19326355_19328820.mRNA
AGAAACGTCACATGGTGTAGTTTGACAGGAAACGTCACCAGCGCGTTGGCTCATGGGATGTGTAGTCTACATGAGTAACGGGTCAAATTTTGTAAGAACATGTTTTATTCTTAACAGGCACTGTTGGAAATCAGAACATTTGTCAAGAGTTGCATTTGCGCTTGTAATGTTATTTAAAATTATTTCCACCATGGAATAAAAAATAAATAAATAAAGATAATTGCGAATTGTTATCTCGCTAATGAGAGTTCATAGGCCTATCTCGAAATTCTGACTTTTAAAAAAAACTTTTTATTTATTTATTTTATTTTTTACTAGGTAGCGGAAACAATCTTTCATAAGAAACAAATGTAGGCTACAGACAAAAAAGTGCAGTATGAGGCGTTTCATGGAATCGGTCCAAACGGTGAGCGAATCATCCGCTCACTTCATCATTCACTCAGTCACTGTTCCTGTTCTACAGTCTCGCGCGCTTCTCCAGTCACAAAAAAGTCACTGTAAATGACTGTCAATGTAGAAACAGCTTATTCTGAGCGGATCCGCCATAAGGACAAGCTTCCGACCGACAGAGAGAGCAGTGACCGGAGAACCAGTGCACTGGACTCAGCCAGGATGGACACCGCTGTGAACGCGCGCGTGATTGTGGCCGTGAGTGTGATCGGGTTCCTCCAGCTCGTGTCCGCTGTCACACTGCTGCTGCACTGCACTGGATTCATCACACAGATGGATTCAGTCACAGAGCTGAAGAACCACTCTGAGGCTGTTATTAAAGACACTGTCGTCAGTGAACGATCAACACGGAACGTTCGTGCCACGATCATCCACTGGAACCCTGATCAGGGTCATCTGTCACACTTCAGATACCACGACGGACGAATTCTTGTCCAGAAATCAGGGCTGTACTACATATACGCCAAAACGTGTTTCCGTCACTACGAGAGCCTGGAGACGGAGGCTGGTTCTGGCCCGGGCTCGTCTGATGCGGTCCAGCTCATCCAGTACGTGTTCCAGGAGCGAGCCACTCACAGCGCCCCCTCCAGGACAGTGCTGATGAAGACCGGGAGCACACGCAGCTGGAGGAGAGGAGCGTACGACATGTGCTGCCATCAGCAGGCCGGACTGTTCCCACTGCGGGACGGAGACGGCGTGTACGTCAGCGTCTCCAACTCATGGATGCTCGACCCGGAGGCTGAAGGAAGCTACTTTGGGGCTTTTAGGATCAGCAAATGAGCTCTGTGAGGAGACATATTTAATGTCATATTTAAAGAGGACCTATTATGCTCTTTTACAAAGTCTTGTTTTTGTGCTCTACTAGAACAGGTTGATTATTTTCCTCATATTCTCCATTGTTCAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTCTGTTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTTTAAAGCACAATGTGCTCTGATTGGTCGGCTGGAACACTGTGTTGTGATTGGTGTTTGGGAAATGTCCCGCCCCTTACCATAACCGCCAGTTTCAACACACTACTAACTAACTCAACCAGGCCCCGCCCCTTTATTCTGCGCATGAATTATTTAAATGAGGAATATTGTGAAGAAAACTCAAGATGGAGGCGTTTCAGGGAGTTCAGAAACACTGACACTGATATAGAGAAGAACTGGAACTTTGCAGAGCTTTTTCATGCTCAAACAGCAACAATTATACAGGAACGGTTTCAGGTTCATTTGTACTCGTAGGGGAATACCCGTCTGAGCGTCTCATCCTGTTTGTCCACCAAACACAATGTGTGATACTTCCTCAGACGAGCAGGATTAGAAATAGACGCAAAACAATCAAATACAGGCCAAATATATATATCAGAAATAGCAGAACGGGGTAAACAGTGTCTGAAGATCGAGATCAAACTACTGAACATGACACACATCCATCATTACGCAACACACCGAACAATAAA

Function

NR:

description
TNF-related apoptosis inducing ligand

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_19326355_19328820.mRNA True 1951 mRNA 0.46 4 19325634 19329321

Neighbor

gene id symbol gene type direction distance location
CI01000340_19323506_19324456 NA coding downstream 623 19323506 ~ 19325011 (-)
CI01000340_19288790_19292748 GPR180 coding downstream 32237 19288096 ~ 19293397 (-)
CI01000340_19280383_19285904 NA coding downstream 39730 19280228 ~ 19285904 (-)
CI01000340_19267148_19271146 PCK1 coding downstream 54488 19266637 ~ 19271146 (-)
CI01000340_19254583_19259959 ARFRP1, ARFRP1.L, ARFRP coding downstream 65675 19254226 ~ 19259959 (-)
CI01000340_19335733_19340791 NA coding upstream 6333 19335654 ~ 19340791 (-)
CI01000340_19346357_19355278 NA coding upstream 16583 19345904 ~ 19355278 (-)
CI01000340_19382181_19383365 NA coding upstream 52651 19381972 ~ 19383454 (-)
CI01000340_19456344_19458688 NA coding upstream 126710 19456031 ~ 19458688 (-)
CI01000340_19512374_19526344 NA coding upstream 181200 19510521 ~ 19526344 (-)
G497444 NA non-coding downstream 157259 19168075 ~ 19168375 (-)
G497442 NA non-coding downstream 158856 19158869 ~ 19166778 (-)
G497440 NA non-coding downstream 170377 19154833 ~ 19155257 (-)
G497393 NA non-coding downstream 238006 19086428 ~ 19087628 (-)
G497288 NA non-coding downstream 359124 18915346 ~ 18966510 (-)
G497375 NA non-coding upstream 86132 19415453 ~ 19420039 (-)
G497341 NA non-coding upstream 100040 19429361 ~ 19431737 (-)
G497350 NA non-coding upstream 119118 19448439 ~ 19451285 (-)
G497351 NA non-coding upstream 162603 19491924 ~ 19494481 (-)
G497479 NA non-coding upstream 174480 19503801 ~ 19550929 (-)
CI01000340_18419431_18419838 NA other downstream 870954 18419058 ~ 18421201 (-)
G496853 NA other downstream 2082895 17177492 ~ 17242739 (-)
G496845 NA other downstream 2279946 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 2805660 16514899 ~ 16518531 (-)

Expression


Co-expression Network