CI01000340_19346357_19355278


Basic Information

Item Value
gene id CI01000340_19346357_19355278
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19345904 ~ 19355278 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_19346357_19355278.mRNA
CGGAGTGAAGAGTTCAGCCGTCACGACCCCTGTGAAGAGCCCGAGCCGGAGTGAAAGCGTGTCCGTCTCCACACTGGTGTCCACGTCCTCAACGCCGTCCGCTCAGACGACCGTCACAAACACTAAAACATCCTCCTGGAGGCTGGACGAGACTCCAATCACGAGACCCGCAGAGAAACCCTTAGCGAGTCCAAAGCTGAGTGATGTCAGTTATTCTCCATCAGCCGTGACCGTGAACACGCGCTACACCTATCAGACTCCCAGCGCTCCACTGGATGATCTCGCTGACGCTTTATTGCCGAGTCTGTCTGGAGGTGTGCAGTCACAGCCTGTCAGATCACAAACGCAAGTCAAGACGGTTTATACGGAGATTCCCGCTGCGTCACCGACTCTACGCTCTCCTCTACAGACGACACTGGAGTCCTCCAGCAGAACGCAAGTCAAGACGGTTTATACAGAGATTCCCGCTGCGTCACCGACTCTACGCTCTCCTCTACAGACGACACTGGAGTCCTCCAGCAGGTCCGTCAGCAGTCGGGATGTGTGTACGGTCTGTGGGAAACCCATCGCTGGAGCAGAGAGGATGATTCTAGAAGAGCTAAAGATCATCAGCCACACGTCCTGCTTCAGGGCGGCGGTGCTGAAGCCGCAGATGATGGCGGATGTTCGCGCCGAGCTGGAGGTGCAGAAACTGCAGGAGCTCGTGCGGAAACTGGAGCGGCAGAACGAGCAGCTGCGGACGCGCGCGAACATCGTGCCGCCCTCGCCGGCGTGCCTGCGCGCGGGCTCCTGCTGCATCCCGAGTCCGGCGCCGAGCCTCGCGTGTCAGTACTTCCCGCCGGACGATCCCTTCCCGTATTTCCAGCCGCATTCCGCCGCGGATGAGGATGATGAGGATGATGAAGAGGACGACGAGCCGCGCGCGCTCCTGGACGAGCTGATGCTTCTGGACCTGGAGACCGTGAGTCCGAGCGGCGAGTCCGAGGAGACCTGGCTCTATGTGTCTCCCAGCTCTCATCTGTGGTCCGGCGCGGGTCTGAACGCTCTTCAGTGGTGTCGACATGTTCTAGATCAGATGGAAACCAGCAGAAACTCGCTCTGCCCAAGACTGGAGCCCGGTCGCAGCGTTCGGCGCAGTGTGTTCGCTCAGGCATCAGTGGACAGCGATGTGAGCGTGTCTGAGCTGGACGACGACTCCGTTACTCTGGGTTATAAACTGCAGGACCTGACGGACGTCCAGGTGATGGCGCGACTGCAGGAGGAGAGTCTGCGTCAGGACTTCGCCACCACCTCTTCTTCCTCCTCTAATAACCGCCGCAGCGCCAGCTTCTCCTTCCAGTTCGGCCCGCGCAGCGATTCGCACCTGGACGAGGAAGAGGAGGATGAGGATGAAGACTACGGTCAGTTGCCGCCACCGCAGCCGCGTCTGAGTCGCGCCGGAGCCCTGCAGCGCGGCCTGCCGCATTCACACACCTTCAGCAGCATCAGGGACTGGAGGAGCAGCAGCACGTCACCCTGCAGCGCGGCGCAGACGCAGACACCTGCGCAGACGCCTGCCAGCGAGACACACGGCCTCAGGAGCAGCTCAGGTGATTATCATGATTAACTGCATCTGTGTGTCCTGGGGTCAGAAATGATGTGTTTTGAATGGAGATGATATACACTACTGTACAAAAGTTTGTATTTTTGTAAAGAAAATTAAATTAAGACATTTATAATGTTACAAAAAAATCTATTTTAAATAAATGCTGACAAATGCTGAAAGAGACTCTTTCAGAAACATTAAAACATCTGAATTATTCCCAACTTTTGACTGCTACTGTGATTTTCAAGGGTGAATCTTCAGCCTCATATAGTGTGACGTTTATAACAATATTCTGTTGAACTAGAGCTGATGGTTGTTGAAGATGTTGGGACTGTTTTTACCCATAAGCCCCAGACTGACCTGGATGTTCTACTTCCTGTGTGTGTTTACGTGTGTGTGTGTGTGTGTGTCGTGTTTGTAATTCTCCGGCCATCAACTGTGGAAATCAGTTGAATATGAGAGTAAGTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_19346357_19355278.mRNA True 2059 mRNA 0.55 12 19345904 19355278

Neighbor

gene id symbol gene type direction distance location
CI01000340_19335733_19340791 NA coding downstream 5113 19335654 ~ 19340791 (-)
CI01000340_19326355_19328820 NA coding downstream 16583 19325634 ~ 19329321 (-)
CI01000340_19323506_19324456 NA coding downstream 20893 19323506 ~ 19325011 (-)
CI01000340_19288790_19292748 GPR180 coding downstream 52507 19288096 ~ 19293397 (-)
CI01000340_19280383_19285904 NA coding downstream 60000 19280228 ~ 19285904 (-)
CI01000340_19382181_19383365 NA coding upstream 26694 19381972 ~ 19383454 (-)
CI01000340_19456344_19458688 NA coding upstream 100753 19456031 ~ 19458688 (-)
CI01000340_19512374_19526344 NA coding upstream 155243 19510521 ~ 19526344 (-)
G497444 NA non-coding downstream 177529 19168075 ~ 19168375 (-)
G497442 NA non-coding downstream 179126 19158869 ~ 19166778 (-)
G497440 NA non-coding downstream 190647 19154833 ~ 19155257 (-)
G497393 NA non-coding downstream 258276 19086428 ~ 19087628 (-)
G497288 NA non-coding downstream 379394 18915346 ~ 18966510 (-)
G497375 NA non-coding upstream 60175 19415453 ~ 19420039 (-)
G497341 NA non-coding upstream 74083 19429361 ~ 19431737 (-)
G497350 NA non-coding upstream 93161 19448439 ~ 19451285 (-)
G497351 NA non-coding upstream 136646 19491924 ~ 19494481 (-)
G497479 NA non-coding upstream 148523 19503801 ~ 19550929 (-)
CI01000340_18419431_18419838 NA other downstream 891224 18419058 ~ 18421201 (-)
G496853 NA other downstream 2103165 17177492 ~ 17242739 (-)
G496845 NA other downstream 2300216 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 2825930 16514899 ~ 16518531 (-)

Expression


Co-expression Network