G485387


Basic Information

Item Value
gene id G485387
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 50473 ~ 50747 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU556987
TATCTAGCAACTCTCATAGCAACCACCCAGGACAACCTAGCAACCACATAGCAACCACCCAGAACACCATGGCAACCACCTAGCAACCACACAAATCACCCTGGCAACATCCTAGCAACCAGCCCGGGTACCCTAGCAACCGCATAGCAACACCTTAGCAACCACCCCGAGTACCCTAGCAACCGCATAGCAACCACCCCGAGTACCCTAGCAACCGCATAGCAACCACCCCGAGTACCCTAGCAACCGTATAGCAACACCTTAGCAACCACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU556987 True 275 lncRNA 0.55 1 50473 50747

Neighbor

gene id symbol gene type direction distance location
CI01000340_00174722_00176216 MCHR1A coding downstream 122988 173735 ~ 176504 (+)
CI01000340_00312480_00313262 NA coding downstream 261465 312212 ~ 313534 (+)
CI01000340_00330446_00342078 STX8 coding downstream 279699 330446 ~ 342078 (+)
CI01000340_00488669_00506008 NA coding downstream 437922 488669 ~ 506802 (+)
CI01000340_00529527_00543895 NA coding downstream 478780 529527 ~ 544508 (+)
G485381 NA non-coding upstream 6292 43982 ~ 44181 (+)
G485367 NA non-coding upstream 22518 24577 ~ 27955 (+)
G485371 NA non-coding downstream 7103 57850 ~ 58387 (+)
G485391 NA non-coding downstream 28829 79576 ~ 80081 (+)
G485400 NA non-coding downstream 41549 92296 ~ 93213 (+)
G485414 NA non-coding downstream 79617 130364 ~ 130640 (+)
G485374 NA non-coding downstream 98833 149580 ~ 150229 (+)
G485373 NA other downstream 56138 106885 ~ 113769 (+)
G485427 NA other downstream 112539 163286 ~ 167634 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2879344 2930635 ~ 2933935 (+)
G487133 NA other downstream 3923168 3973915 ~ 3982545 (+)

Expression


Co-expression Network