G485437


Basic Information

Item Value
gene id G485437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 191642 ~ 191932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557040
CTAATTGCAAGAGTATCTGAATTCTACATATAGCCCATTTAAATGTAGCAGTAGTAATAATGGGCCTGTATTAAAGAAACGTACAATATATTTAAAGAGACAGGTGAAACACCCTCATGTTGATAAAAACCTGCAAGTCACTTACTTTCTTCCATGAAATACAAAATGAAATGTTAAGCAGAATGATAGCCTCAAGGTGCGGTCACATTTACAGTTGCTTGGCAAAATTTTGCAGGTGAAAGCCAGTCATTTCAATAGGAATCTATGCAATCGGGAGTTTAGCATGAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557040 True 291 lncRNA 0.36 1 191642 191932

Neighbor

gene id symbol gene type direction distance location
CI01000340_00174722_00176216 MCHR1A coding upstream 15138 173735 ~ 176504 (+)
CI01000340_00312480_00313262 NA coding downstream 120280 312212 ~ 313534 (+)
CI01000340_00330446_00342078 STX8 coding downstream 138514 330446 ~ 342078 (+)
CI01000340_00488669_00506008 NA coding downstream 296737 488669 ~ 506802 (+)
CI01000340_00529527_00543895 NA coding downstream 337595 529527 ~ 544508 (+)
CI01000340_00559281_00560682 NA coding downstream 366092 558024 ~ 560682 (+)
G485433 NA non-coding upstream 8177 183227 ~ 183465 (+)
G485374 NA non-coding upstream 41413 149580 ~ 150229 (+)
G485414 NA non-coding upstream 61002 130364 ~ 130640 (+)
G485400 NA non-coding upstream 98429 92296 ~ 93213 (+)
G485391 NA non-coding upstream 111561 79576 ~ 80081 (+)
G485438 NA non-coding downstream 887 192819 ~ 244815 (+)
G485443 NA non-coding downstream 28824 220756 ~ 221282 (+)
G485441 NA non-coding downstream 34291 226223 ~ 242659 (+)
G485511 NA non-coding downstream 106085 298017 ~ 298440 (+)
G485520 NA non-coding downstream 133427 325359 ~ 325695 (+)
G485427 NA other upstream 24008 163286 ~ 167634 (+)
G485373 NA other upstream 77873 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2738159 2930635 ~ 2933935 (+)
G487133 NA other downstream 3781983 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 4207487 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 4472377 4659584 ~ 4669322 (+)

Expression


Co-expression Network