G485443


Basic Information

Item Value
gene id G485443
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 220756 ~ 221282 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557060
GCGTTGATCAATGTTTATATGTAAATAAAAGCCTAAATTAAATCTGTTCATTACAGAACACGATCGTGCCTCTTCAGAAGATTTAAACAGCTTGATTTATATGCATTACTTTTACCATCTCTTTATGAAATTTTCGAAGCTTGAAAGTTATGGTGGAATGGACTTTGAATTGAGGGAATGACAGCAGCATAGTGGAACTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557060 True 202 lncRNA 0.34 2 220756 221282

Neighbor

gene id symbol gene type direction distance location
CI01000340_00174722_00176216 MCHR1A coding upstream 44252 173735 ~ 176504 (+)
CI01000340_00312480_00313262 NA coding downstream 90930 312212 ~ 313534 (+)
CI01000340_00330446_00342078 STX8 coding downstream 109164 330446 ~ 342078 (+)
CI01000340_00488669_00506008 NA coding downstream 267387 488669 ~ 506802 (+)
CI01000340_00529527_00543895 NA coding downstream 308245 529527 ~ 544508 (+)
CI01000340_00559281_00560682 NA coding downstream 336742 558024 ~ 560682 (+)
G485437 NA non-coding upstream 28824 191642 ~ 191932 (+)
G485433 NA non-coding upstream 37291 183227 ~ 183465 (+)
G485374 NA non-coding upstream 70527 149580 ~ 150229 (+)
G485414 NA non-coding upstream 90116 130364 ~ 130640 (+)
G485400 NA non-coding upstream 127543 92296 ~ 93213 (+)
G485441 NA non-coding downstream 4941 226223 ~ 242659 (+)
G485511 NA non-coding downstream 76735 298017 ~ 298440 (+)
G485520 NA non-coding downstream 104077 325359 ~ 325695 (+)
G485551 NA non-coding downstream 255347 476629 ~ 476865 (+)
G485564 NA non-coding downstream 350425 571707 ~ 572179 (+)
G485427 NA other upstream 53122 163286 ~ 167634 (+)
G485373 NA other upstream 106987 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2708809 2930635 ~ 2933935 (+)
G487133 NA other downstream 3752633 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 4178137 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 4443027 4659584 ~ 4669322 (+)

Expression


Co-expression Network