G485441


Basic Information

Item Value
gene id G485441
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 226223 ~ 242659 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557055
CTACCAGAGTACGTCGATTTACCCTTATTAGCTGATAATTCTGATTATGTTCAAAATTGACGATTTAGATCTCCTCTCTGAGAAAATCCCAATTTGGTGTTCAATTGGCAAAAAAGGTTGGGAAACCCTTAGAGGGTTCCTTCTGTAACATTAGGTTTAAGATGTAATGCTTTAGTCACCTTGTAGCTTGTTGGCCAGATCCAGCAACATTGCAGAGTAACAGGAGGATCTTTGAAGAACCACCCTGATTCAAGAATTCTGATGATAACGTCCCTGAGGGTGGTAACCTGTGACCTTCGTGCTCTGCAGTGTATGGGGAGGAAGGGAGGGAGTGATGGAACCCTGAGAATCGCATGGAGCCTCCTCTGGTGAACAGGGGTGGAGCCTGGAAGGCGTAGATGACATCACTCTCTGAGATACTCGTCATATCATCTTCATCAGAGAAAGAGCGCTGGAACCCATTTGAGTTAATCTCTGTCAAAATCACCTGGTCTGGAGAGATCTTGCCCTCCTCTGCTACCATGGCCCTGAGTGTTGAGACAGACCCAAACAGAGGCACAGCCAACCCTACTCTCAGAAACCGCTGACCTTCATTGTTGAACACCAGTGTCACATTCAGGGCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557055 True 625 lncRNA 0.47 3 226223 242659

Neighbor

gene id symbol gene type direction distance location
CI01000340_00174722_00176216 MCHR1A coding upstream 49719 173735 ~ 176504 (+)
CI01000340_00312480_00313262 NA coding downstream 69553 312212 ~ 313534 (+)
CI01000340_00330446_00342078 STX8 coding downstream 87787 330446 ~ 342078 (+)
CI01000340_00488669_00506008 NA coding downstream 246010 488669 ~ 506802 (+)
CI01000340_00529527_00543895 NA coding downstream 286868 529527 ~ 544508 (+)
CI01000340_00559281_00560682 NA coding downstream 315365 558024 ~ 560682 (+)
G485443 NA non-coding upstream 4941 220756 ~ 221282 (+)
G485437 NA non-coding upstream 34291 191642 ~ 191932 (+)
G485433 NA non-coding upstream 42758 183227 ~ 183465 (+)
G485374 NA non-coding upstream 75994 149580 ~ 150229 (+)
G485414 NA non-coding upstream 95583 130364 ~ 130640 (+)
G485511 NA non-coding downstream 55358 298017 ~ 298440 (+)
G485520 NA non-coding downstream 82700 325359 ~ 325695 (+)
G485551 NA non-coding downstream 233970 476629 ~ 476865 (+)
G485564 NA non-coding downstream 329048 571707 ~ 572179 (+)
G485614 NA non-coding downstream 436508 679167 ~ 679379 (+)
G485427 NA other upstream 58589 163286 ~ 167634 (+)
G485373 NA other upstream 112454 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2687432 2930635 ~ 2933935 (+)
G487133 NA other downstream 3731256 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 4156760 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 4421650 4659584 ~ 4669322 (+)

Expression


Co-expression Network