G485520


Basic Information

Item Value
gene id G485520
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 325359 ~ 325695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557147
CCTGAAGATCACGGGCATCCAGTATGGTTTTCCGGCCTTGACCCTTACGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATGCACTGTAGATGATGATAACTTCAAACTCTTTGCAATTTTTCTCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGCCACAGCATTGGGGGAATTGGTGATCCTCTGCCCATCTTGACTTCTGAGAGACACTGCCACTCTGAGAGGCTCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTTCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557147 True 337 lncRNA 0.42 1 325359 325695

Neighbor

gene id symbol gene type direction distance location
CI01000340_00312480_00313262 NA coding upstream 11825 312212 ~ 313534 (+)
CI01000340_00174722_00176216 MCHR1A coding upstream 148855 173735 ~ 176504 (+)
CI01000340_00330446_00342078 STX8 coding downstream 4751 330446 ~ 342078 (+)
CI01000340_00488669_00506008 NA coding downstream 162974 488669 ~ 506802 (+)
CI01000340_00529527_00543895 NA coding downstream 203832 529527 ~ 544508 (+)
CI01000340_00559281_00560682 NA coding downstream 232329 558024 ~ 560682 (+)
CI01000340_00575085_00576868 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding downstream 248765 574460 ~ 577456 (+)
G485511 NA non-coding upstream 26919 298017 ~ 298440 (+)
G485438 NA non-coding upstream 80544 192819 ~ 244815 (+)
G485441 NA non-coding upstream 82700 226223 ~ 242659 (+)
G485443 NA non-coding upstream 104077 220756 ~ 221282 (+)
G485437 NA non-coding upstream 133427 191642 ~ 191932 (+)
G485551 NA non-coding downstream 150934 476629 ~ 476865 (+)
G485564 NA non-coding downstream 246012 571707 ~ 572179 (+)
G485614 NA non-coding downstream 353472 679167 ~ 679379 (+)
G485600 NA non-coding downstream 354628 680323 ~ 681788 (+)
G485616 NA non-coding downstream 356274 681969 ~ 682218 (+)
G485427 NA other upstream 157725 163286 ~ 167634 (+)
G485373 NA other upstream 211590 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2604396 2930635 ~ 2933935 (+)
G487133 NA other downstream 3648220 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 4073724 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 4338614 4659584 ~ 4669322 (+)
G489634 NA other downstream 6368526 6694221 ~ 6700788 (+)

Expression


Co-expression Network