G485852


Basic Information

Item Value
gene id G485852
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 479425 ~ 480779 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557534
CGCTGTGCCTGAATATGGCTTTTGGGAATCTGTTTTAGAACTAAGACATTACAATACATTACACTATAAGTTTTCTACATGTTTTTGTTCAGTGACATTTTATGGGCTGACCTCAGTGTTTAAAAGCAATGATACACACACTGATGATCGTCACCACTGAAACCTTCATCCAGTTTCATTTCCACAGTCTCTATAGTTGCGCAATCTTTGGCCTTCCAGCAGACTTTAGATTAAAGGGTTAGTTCACCCAAAATTCTGTCATCGTTTAGCTGTTCCAAACCAGTGTGAATTTCTTTCTTCTGCTGAACACAAAAGAAGATATTTTGAAGAACCAAACAGTTGATGGTCAGTAAATGATAACAGAATTTTAATTTTTGGGTGAACTATCCCTTTAACTTGAATTTAAGCTTGGCCAACGATCTGTTATTACATGACGAACCCGTTATTTTACTCAAGTGAATGTTTGTCACAAGCATTTACAACTTACAGTTGCATCAACTGCATGTGTGATGTTGCTTATTCATTTATTTTATTGTAGCACATTCTATTGTACTGTACTAAAATATTTACAAATATGCAAAATCCATTTATTTTTTAGCTGAAATTAACCAAACCCACCTTCTCATGGTTTAAACTGAACAGTAACATATTTTGATGTTCCTGTCTCTTAAGTTGCTGATGGACAAGCACATAAATGCCTAAAAAAAAAACTTCCTTATGTACGTATTATTAGAGTTTCTGTCGGATGCTGTTTATGCATGAAAAGGAGAAGTATCTCACTAGTTTAAAGCTGTTCTATCACATTTGCCCCTGTAGTCAACCAAAACACTAAAGGCCAGTTCTTGCAGAGTGACTATGAACTTTTTTGTTTCAGAGTGCTATGGTAGTAATGAAAATGAATATATCATTTGAATATTATAGACAGTATTAAATAGGAAACTAATTTGCAAGTAAAATGATTTCATGAGTAAAGTAAATATATATCTCATTTTCAGCTGCACATATAAATGTAAGATCCTTGACCTTAGAGGCTTATACGCCATCATTATTTGGAAACGTGTACATTACATCACATGAATGCATCAACTATTATGAATTCATCAGTGCATCAGTCATTAACAGAATCCAAAGCACATGAATCTACAGAGCTGGAATATCAGCTTGTTTGACTACATTTTACAACCAAACACACTATCACTTAGAATCCGCAGACTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557534 True 1218 lncRNA 0.34 2 479425 480779

Neighbor

gene id symbol gene type direction distance location
CI01000340_00399009_00473643 NTN1B, NTN1.L, NTN1A, UNC-6, NTN1 coding downstream 5782 399009 ~ 473643 (-)
CI01000340_00320527_00323526 NA coding downstream 155415 320143 ~ 324010 (-)
CI01000340_00300171_00311362 CFAP52 coding downstream 167407 299895 ~ 312018 (-)
CI01000340_00197972_00296049 USP43A coding downstream 183376 197972 ~ 296049 (-)
CI01000340_00151447_00155343 GRB2A, GRB2B, GRB2, GRB2.S coding downstream 324082 150535 ~ 155343 (-)
CI01000340_00641314_00671233 SEC16B coding upstream 160514 641293 ~ 671233 (-)
CI01000340_00683967_00684845 GBG12, GNG12, GNG12.L, GNG12A coding upstream 202015 682794 ~ 684865 (-)
CI01000340_00739436_00741531 DR1 coding upstream 257626 738405 ~ 741637 (-)
CI01000340_00750353_00755174 RDH8 coding upstream 269360 750139 ~ 755174 (-)
CI01000340_00764259_00771823 SCINLA coding upstream 282933 763712 ~ 773298 (-)
G485796 NA non-coding downstream 127701 351356 ~ 351724 (-)
G485775 NA non-coding downstream 337976 141211 ~ 141449 (-)
G485745 NA non-coding downstream 361057 60185 ~ 118368 (-)
G485771 NA non-coding downstream 365529 106885 ~ 113896 (-)
G485744 NA non-coding downstream 419382 57883 ~ 60043 (-)
G485805 NA non-coding upstream 15898 496677 ~ 499007 (-)
G485800 NA non-coding upstream 93617 574396 ~ 676396 (-)
G485888 NA non-coding upstream 207243 688022 ~ 689024 (-)
G485954 NA non-coding upstream 450822 931601 ~ 932122 (-)
G485786 NA other downstream 153709 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 397330 62780 ~ 82095 (-)
CI01000340_00787534_00791061 NA other upstream 305772 786551 ~ 791409 (-)
G487884 NA other upstream 1415022 1895801 ~ 1902272 (-)
G488782 NA other upstream 3525026 4005805 ~ 4006448 (-)
G488862 NA other upstream 4026417 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 4119441 4598714 ~ 4627447 (-)

Expression


Co-expression Network