G485805


Basic Information

Item Value
gene id G485805
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 496677 ~ 499007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557482
AGAGACGGCTGGTTTCAGTGGACTTGCTGAGAGCTGCAGAGAAGAACCAGAGTTCTTCAAAGAAGAGTTGGCTAGAGTTGTATCCCTCCTTACAGGCACAAAGAAAAACTTCATCCTGAAAGCTTTGGTGAGGTGCGGACAGTCTCTTTCTCTTTTCCTTAGACTGCCATAGGCACGGGCAACCCTCCCTGCCACATGATCTGCCCCAAACACCACCACTCTGAGCGTAGTGGCCCCTGCTGGCCCTTCCTCATCATCGCTACTCAGAATGGGTCTTCTCCTGTAGCAAACGTATTGCAACTGCGAGAGGGGGGGCACTGGGAACCCAACATCAGAGCTCCGTAGCCGCACCTGCTGTGGAAGAGAATTGGATCTCTTAGAGCGGACAACCACTACTAAATCTTTAGCCTCAGGGCTGCCCAGGCTCTTGGCTCGACAGAGAGAGTTGCTGCTGCGAGGTTTGAAGAGTCGTGAGAGGCGCTTGGAAAGTCGTGCGGTGGTTTTGGCCTTGGACACTGACGCTGTGCTCAGACAGTCCTCCTCTGCGTCCTCACAGAAGTCACTATCTGTGCCCGAAGCTTGAGATGAGGATGAAAGCGTAGAGAGGGGAGAGTATTCGGAGGAAGCAACCGACAGTGTGGAGAACATTGAGTCTTTGGAGGCAGTGGAAAGGGAGGAGACATTGGAGAAAGTTGATGCCCGATAGTTAGTGCAACCATTTGAAACAAACCCCTCCTCCAAGTCATCATATTCGTCATCTTCCACATCAACATTGTCAACATCATCCTCCTCCATGCCCTCAGACGTTTGAGATAGGGTCAATTCAGACTCTATGTCTAGAAGGTCGTTTAGAACATCAAAATTATCCTTGTCCCAATGGAAAGTGTAGCACTTGGCTGCTGGAAGGCTGAGCGTCTGAAGAACCCCATCTGACATCGTGCCATTGGTGGCTGGTATGCCAAGTTTTTCTCGCAGTGCCTCCAGGCCACCCTTTACATGTTCCCGAGCTTTAGCTATATCCGTCATGGCCGCTGCAGACTCTAGAAAGTCACTCACTGAGGACAGAATCTGTGCCAACTCATCATCACCAAGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557482 True 1096 lncRNA 0.51 3 496677 499007

Neighbor

gene id symbol gene type direction distance location
CI01000340_00399009_00473643 NTN1B, NTN1.L, NTN1A, UNC-6, NTN1 coding downstream 23034 399009 ~ 473643 (-)
CI01000340_00320527_00323526 NA coding downstream 172667 320143 ~ 324010 (-)
CI01000340_00300171_00311362 CFAP52 coding downstream 184659 299895 ~ 312018 (-)
CI01000340_00197972_00296049 USP43A coding downstream 200628 197972 ~ 296049 (-)
CI01000340_00151447_00155343 GRB2A, GRB2B, GRB2, GRB2.S coding downstream 341334 150535 ~ 155343 (-)
CI01000340_00641314_00671233 SEC16B coding upstream 142286 641293 ~ 671233 (-)
CI01000340_00683967_00684845 GBG12, GNG12, GNG12.L, GNG12A coding upstream 183787 682794 ~ 684865 (-)
CI01000340_00739436_00741531 DR1 coding upstream 239398 738405 ~ 741637 (-)
CI01000340_00750353_00755174 RDH8 coding upstream 251132 750139 ~ 755174 (-)
CI01000340_00764259_00771823 SCINLA coding upstream 264705 763712 ~ 773298 (-)
G485852 NA non-coding downstream 15898 479425 ~ 480779 (-)
G485796 NA non-coding downstream 144953 351356 ~ 351724 (-)
G485775 NA non-coding downstream 355228 141211 ~ 141449 (-)
G485745 NA non-coding downstream 378309 60185 ~ 118368 (-)
G485771 NA non-coding downstream 382781 106885 ~ 113896 (-)
G485800 NA non-coding upstream 75389 574396 ~ 676396 (-)
G485888 NA non-coding upstream 189015 688022 ~ 689024 (-)
G485954 NA non-coding upstream 432594 931601 ~ 932122 (-)
G485962 NA non-coding upstream 443400 942407 ~ 943669 (-)
G485786 NA other downstream 170961 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 414582 62780 ~ 82095 (-)
CI01000340_00787534_00791061 NA other upstream 287544 786551 ~ 791409 (-)
G487884 NA other upstream 1396794 1895801 ~ 1902272 (-)
G488782 NA other upstream 3506798 4005805 ~ 4006448 (-)
G488862 NA other upstream 4008189 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 4101213 4598714 ~ 4627447 (-)

Expression


Co-expression Network