G485614


Basic Information

Item Value
gene id G485614
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 679167 ~ 679379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557247
AATTAAGAAGTTCCAATCAAGTAAAGATGTTACAAATCTGCCTGGAAGAGGACGTGTGTCTAAATCGTCCTAATGCACGGTGAGGAGGAACATTTAAGTGGCCAAAGACTCTCCAAGGATCACAGCTGGAGAATTGCAGAGATTAGTTGAGTCTTGGGGTCAGAAAGCCTAAAAATAAAAAAAATCAGTCAGCACCTACATCACCAAAAGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557247 True 213 lncRNA 0.41 1 679167 679379

Neighbor

gene id symbol gene type direction distance location
CI01000340_00672283_00673853 GADD45AB, GADD45A coding upstream 4675 672283 ~ 674492 (+)
CI01000340_00630670_00634136 NA coding upstream 44936 630547 ~ 634231 (+)
CI01000340_00575085_00576868 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding upstream 101711 574460 ~ 577456 (+)
CI01000340_00559281_00560682 NA coding upstream 118485 558024 ~ 560682 (+)
CI01000340_00529527_00543895 NA coding upstream 134659 529527 ~ 544508 (+)
CI01000340_00710056_00726924 NA coding downstream 30451 709830 ~ 727495 (+)
CI01000340_00883803_00902915 NA coding downstream 204022 883401 ~ 903402 (+)
CI01000340_00927319_01001912 TGFBR3 coding downstream 247940 927319 ~ 1001912 (+)
CI01000340_01065200_01074925 ZNF644B coding downstream 385270 1064649 ~ 1075153 (+)
CI01000340_01146151_01149216 BARHL2 coding downstream 465783 1145162 ~ 1149477 (+)
G485564 NA non-coding upstream 106988 571707 ~ 572179 (+)
G485551 NA non-coding upstream 202302 476629 ~ 476865 (+)
G485520 NA non-coding upstream 353472 325359 ~ 325695 (+)
G485511 NA non-coding upstream 380727 298017 ~ 298440 (+)
G485441 NA non-coding upstream 436508 226223 ~ 242659 (+)
G485600 NA non-coding downstream 944 680323 ~ 681788 (+)
G485616 NA non-coding downstream 2590 681969 ~ 682218 (+)
G485618 NA non-coding downstream 3324 682703 ~ 682992 (+)
G485654 NA non-coding downstream 65892 745271 ~ 745493 (+)
G485659 NA non-coding downstream 78967 758346 ~ 758572 (+)
CI01000340_00312480_00313262 NA other upstream 365922 312212 ~ 313534 (+)
G485427 NA other upstream 511533 163286 ~ 167634 (+)
G485373 NA other upstream 565398 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2250712 2930635 ~ 2933935 (+)
G487133 NA other downstream 3294536 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3720040 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3984930 4659584 ~ 4669322 (+)
G489634 NA other downstream 6014842 6694221 ~ 6700788 (+)

Expression


Co-expression Network