G485600


Basic Information

Item Value
gene id G485600
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 680323 ~ 681788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557233
GAAAAAGAAAACATCTACAACCCAATATATTGGGACCCAGCTCTTCTGCACAAGGAAAGCAAGATGGAAAATTCACTCAAAAATGGTGACACTGAATGCTCTTCATAATAAAGAAAAAAAAAAAAAGAAATTAAATTAAATGCAAAAAGAGATAAGGCAGAACGAAGAGCTTGTGCATGTCATATTCACAATACAAAAGCACCTTCAGAAATGACCACTGCATCAAGAAAAACACATTTGTCCAAATAACAACAGGCCACTGTGACAACTTAATACTACTTTTGGGAAACATTACAAAAATGTCACTTTAAAAGCATCACTCAACAAGAAAGCATGGCTGAAACTGCCATTCAAAGCATACTGTTGTTCAGATAAGATTGTGGTATAGCACAGTTGAAGTTCAGTTGCATGAGAAATCATTATTGATGCACAGGCGAGGATCAGATGTCTGGCTGGGTATATATCCAGACTGATGACACAGATGTGTAGTGAAGAAGACACAGTGAAGTTGTCTGTGGGACAGCAGCACCACTAGTTCACAGTAGTTTAACTCTGGCTGACGTCTCGAGACAGGAGCGTGGCAGTGGACGTGTCAGGAATATTTCATTAAGGCTGGTTCAGCTGGTCTGGTGAAGTTGTTTTCTGCCAGCTGTGTCATAAAGGCATTCCACACTCACTTTCATTAAATGCATGGCAATTCACAAGAGTATTACACACACACACACACACACACACACACACACGCACAAAAAAAGAACAGGAGTTGTAAACATGGAATGACATTAAAATGCATGATTATAACAGTCACAAAAATCACTACAATCAGAGAAATCATTATGTGCTCAGTGTGCAGCTACAGAAAAATCATATGTGACCCTTCGTGAGTTTCTATTGCTGGTTAGATCCCAGAATGAGATGGCACAATGACATTAATGTTTGTTATAAAAAAGAGACAATGATAACAAAACAATCAGAAGAAATGCGTACATTAACGTATAAGGCATCTTGTAAATAATCATTAAAGGGTTACAATATATTATGTACCATGATCTGCAATAAAGTATTGTATCTATCATACACCGGGCAATAACACAATTCAGTGTATCTAATGCAAATTTTGAGGTTTTTTAATGTAAAATATGATCCCATTTACTGAAAGTGGGCATTTAAAGAATGGAGGTTCTGTGAAATGGGTGTACTCTTTACAATAAGGCTTAATGTGTTAAAATTAGTTAATGCATTATATTTTGGTAACACTTTACAATAAGGTTGAATGTGTTAACATTAGTTAATGCGAGTATCATGAACTAACAATGATATTAATTTCCTGATCCCTTGAAAACCCTTTTTCGTCTTTCACACACATATATATATATATATATATATATAGCAGTTGTTATGTCAAAAATCAGTTCTGATTTGGTGCTTAAAGGGTTAGTTCACCAAAAAAAAATGAAAATTCTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU557233 True 1466 lncRNA 0.35 1 680323 681788

Neighbor

gene id symbol gene type direction distance location
CI01000340_00672283_00673853 GADD45AB, GADD45A coding upstream 5831 672283 ~ 674492 (+)
CI01000340_00630670_00634136 NA coding upstream 46092 630547 ~ 634231 (+)
CI01000340_00575085_00576868 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding upstream 102867 574460 ~ 577456 (+)
CI01000340_00559281_00560682 NA coding upstream 119641 558024 ~ 560682 (+)
CI01000340_00529527_00543895 NA coding upstream 135815 529527 ~ 544508 (+)
CI01000340_00710056_00726924 NA coding downstream 28042 709830 ~ 727495 (+)
CI01000340_00883803_00902915 NA coding downstream 201613 883401 ~ 903402 (+)
CI01000340_00927319_01001912 TGFBR3 coding downstream 245531 927319 ~ 1001912 (+)
CI01000340_01065200_01074925 ZNF644B coding downstream 382861 1064649 ~ 1075153 (+)
CI01000340_01146151_01149216 BARHL2 coding downstream 463374 1145162 ~ 1149477 (+)
G485614 NA non-coding upstream 944 679167 ~ 679379 (+)
G485564 NA non-coding upstream 108144 571707 ~ 572179 (+)
G485551 NA non-coding upstream 203458 476629 ~ 476865 (+)
G485520 NA non-coding upstream 354628 325359 ~ 325695 (+)
G485511 NA non-coding upstream 381883 298017 ~ 298440 (+)
G485616 NA non-coding downstream 181 681969 ~ 682218 (+)
G485618 NA non-coding downstream 915 682703 ~ 682992 (+)
G485654 NA non-coding downstream 63483 745271 ~ 745493 (+)
G485659 NA non-coding downstream 76558 758346 ~ 758572 (+)
G485626 NA non-coding downstream 88110 769898 ~ 773660 (+)
CI01000340_00312480_00313262 NA other upstream 367078 312212 ~ 313534 (+)
G485427 NA other upstream 512689 163286 ~ 167634 (+)
G485373 NA other upstream 566554 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2248303 2930635 ~ 2933935 (+)
G487133 NA other downstream 3292127 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3717631 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3982521 4659584 ~ 4669322 (+)
G489634 NA other downstream 6012433 6694221 ~ 6700788 (+)

Expression


Co-expression Network