G485693


Basic Information

Item Value
gene id G485693
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 825626 ~ 828842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557339
CTTGGTCAGAGTTGACCTGAGAGTCAACATCAGGGCCATGTGCAGCAGTACCGTTCACTACCAGTGACTGGCCGTTGTGTACATTTAAGGCAGTATTTTCCTTCGCCAGGCACTTGTCATCTGTGTACACTTTTTGTATGAAGTCCTTGAGGGCTGCAGGTTCAATCCCCTGCAGGTGGATGACAGGTGTAGTTGGTTCGGTTCCCTGCAGGAGGTGAGGAGCTCTGGCCAGCAGCACCGCCCTGTGGGCCTTCAGCCGAACAACAGAACCCACACACAGAGTGACGTCAGTCTCCTGCTCCTCCTGCAGCAGTCGGTTCAGGTCTTCTGACAGAGCATTTGCCAGTCGCTTCTTCAGCTGGTTTCTGCATTTGCGCTCTTTAGCTTGGAACTCCCTGGCAGCCTCGGTGGATGACATGTTATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557339 True 425 lncRNA 0.54 3 825626 828842

Neighbor

gene id symbol gene type direction distance location
CI01000340_00710056_00726924 NA coding upstream 98131 709830 ~ 727495 (+)
CI01000340_00672283_00673853 GADD45AB, GADD45A coding upstream 151134 672283 ~ 674492 (+)
CI01000340_00630670_00634136 NA coding upstream 191395 630547 ~ 634231 (+)
CI01000340_00575085_00576868 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding upstream 248170 574460 ~ 577456 (+)
CI01000340_00559281_00560682 NA coding upstream 264944 558024 ~ 560682 (+)
CI01000340_00883803_00902915 NA coding downstream 54559 883401 ~ 903402 (+)
CI01000340_00927319_01001912 TGFBR3 coding downstream 98477 927319 ~ 1001912 (+)
CI01000340_01065200_01074925 ZNF644B coding downstream 235807 1064649 ~ 1075153 (+)
CI01000340_01146151_01149216 BARHL2 coding downstream 316320 1145162 ~ 1149477 (+)
CI01000340_01322847_01325739 NA coding downstream 494005 1322847 ~ 1327211 (+)
G485689 NA non-coding upstream 4729 820169 ~ 820897 (+)
G485671 NA non-coding upstream 28086 797199 ~ 797540 (+)
G485626 NA non-coding upstream 51966 769898 ~ 773660 (+)
G485659 NA non-coding upstream 67054 758346 ~ 758572 (+)
G485654 NA non-coding upstream 80133 745271 ~ 745493 (+)
G485706 NA non-coding downstream 22146 850988 ~ 853533 (+)
G485717 NA non-coding downstream 189492 1018334 ~ 1018547 (+)
G485718 NA non-coding downstream 189778 1018620 ~ 1018830 (+)
G485727 NA non-coding downstream 204526 1033368 ~ 1033603 (+)
G485733 NA non-coding downstream 216433 1045275 ~ 1045494 (+)
CI01000340_00312480_00313262 NA other upstream 512381 312212 ~ 313534 (+)
G485427 NA other upstream 657992 163286 ~ 167634 (+)
G485373 NA other upstream 711857 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2101249 2930635 ~ 2933935 (+)
G487133 NA other downstream 3145073 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3570577 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3835467 4659584 ~ 4669322 (+)
G489634 NA other downstream 5865379 6694221 ~ 6700788 (+)

Expression


Co-expression Network