G486080


Basic Information

Item Value
gene id G486080
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1133117 ~ 1133324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557770
CATTGTACAGTATAAAAATCCTTGTCCAATATCCCCATAAAACATGGAAACCCAATGTTTGTGTGTTTGGGTGTGTTTTAAACTGTTTTTTGTTTGTTTGTTTTTACATGTTGCTAAATTGTAATTATTTAAGGGTGTACAGCTATGTAAAATTAACCTCATGTTAACATCTAACAACATTACCAATTTATGAACATTATAACTCGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557770 True 208 lncRNA 0.30 1 1133117 1133324

Neighbor

gene id symbol gene type direction distance location
CI01000340_01065200_01074925 ZNF644B coding upstream 57964 1064649 ~ 1075153 (+)
CI01000340_00927319_01001912 TGFBR3 coding upstream 131205 927319 ~ 1001912 (+)
CI01000340_00883803_00902915 NA coding upstream 229715 883401 ~ 903402 (+)
CI01000340_00710056_00726924 NA coding upstream 405622 709830 ~ 727495 (+)
CI01000340_00672283_00673853 GADD45AB, GADD45A coding upstream 458625 672283 ~ 674492 (+)
CI01000340_01146151_01149216 BARHL2 coding downstream 11838 1145162 ~ 1149477 (+)
CI01000340_01322847_01325739 NA coding downstream 189523 1322847 ~ 1327211 (+)
CI01000340_01343319_01351087 NA coding downstream 208749 1342073 ~ 1351623 (+)
CI01000340_01426152_01431129 NA coding downstream 292828 1426152 ~ 1431147 (+)
CI01000340_01627145_01646966 NA coding downstream 493210 1626534 ~ 1647125 (+)
G486076 NA non-coding upstream 1933 1130974 ~ 1131184 (+)
G486046 NA non-coding upstream 23929 1108856 ~ 1109188 (+)
G485733 NA non-coding upstream 87623 1045275 ~ 1045494 (+)
G485727 NA non-coding upstream 99514 1033368 ~ 1033603 (+)
G485718 NA non-coding upstream 114287 1018620 ~ 1018830 (+)
G486170 NA non-coding downstream 117175 1250499 ~ 1251975 (+)
G486203 NA non-coding downstream 241591 1374915 ~ 1382110 (+)
G486224 NA non-coding downstream 262591 1395915 ~ 1396152 (+)
G486225 NA non-coding downstream 263378 1396702 ~ 1397020 (+)
G486234 NA non-coding downstream 285502 1418826 ~ 1419075 (+)
CI01000340_00312480_00313262 NA other upstream 819872 312212 ~ 313534 (+)
G485427 NA other upstream 965483 163286 ~ 167634 (+)
G485373 NA other upstream 1019348 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 1796767 2930635 ~ 2933935 (+)
G487133 NA other downstream 2840591 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3266095 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3530985 4659584 ~ 4669322 (+)
G489634 NA other downstream 5560897 6694221 ~ 6700788 (+)

Expression


Co-expression Network