G486236


Basic Information

Item Value
gene id G486236
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1421895 ~ 1422110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU557947
TTTCACCTTTAGAGAAAAATACGTCAAAGACGACCACACACTCTTCAGCAGCTGGAAACCTATTTCAGGCAAAAATGGGACCAAATTTCAACACCAAAACTCCAGAAACTCATAACCTCGATGCCCAGATGTCTTCACACTGTTTTAAAAAGAAGAGGAGATGCTACACCATGGTAAACATGACCCCGTCCCAACTATTTTGAGACCTGTAGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557947 True 216 lncRNA 0.43 1 1421895 1422110

Neighbor

gene id symbol gene type direction distance location
CI01000340_01343319_01351087 NA coding upstream 70272 1342073 ~ 1351623 (+)
CI01000340_01322847_01325739 NA coding upstream 94684 1322847 ~ 1327211 (+)
CI01000340_01146151_01149216 BARHL2 coding upstream 272418 1145162 ~ 1149477 (+)
CI01000340_01065200_01074925 ZNF644B coding upstream 346742 1064649 ~ 1075153 (+)
CI01000340_00927319_01001912 TGFBR3 coding upstream 419983 927319 ~ 1001912 (+)
CI01000340_01426152_01431129 NA coding downstream 4042 1426152 ~ 1431147 (+)
CI01000340_01627145_01646966 NA coding downstream 204424 1626534 ~ 1647125 (+)
CI01000340_01691376_01694051 NA coding downstream 268989 1691099 ~ 1694848 (+)
CI01000340_01708371_01768517 NA coding downstream 286060 1708170 ~ 1769020 (+)
CI01000340_01807038_01807351 NA coding downstream 384774 1806884 ~ 1808724 (+)
G486235 NA non-coding upstream 1097 1420228 ~ 1420798 (+)
G486234 NA non-coding upstream 2820 1418826 ~ 1419075 (+)
G486225 NA non-coding upstream 24875 1396702 ~ 1397020 (+)
G486224 NA non-coding upstream 25743 1395915 ~ 1396152 (+)
G486203 NA non-coding upstream 39785 1374915 ~ 1382110 (+)
G486347 NA non-coding downstream 71204 1493314 ~ 1493644 (+)
G486383 NA non-coding downstream 105397 1527507 ~ 1527833 (+)
G486403 NA non-coding downstream 135344 1557454 ~ 1557753 (+)
G486427 NA non-coding downstream 170985 1593095 ~ 1593322 (+)
G486461 NA non-coding downstream 234723 1656833 ~ 1661924 (+)
CI01000340_00312480_00313262 NA other upstream 1108650 312212 ~ 313534 (+)
G485427 NA other upstream 1254261 163286 ~ 167634 (+)
G485373 NA other upstream 1308126 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 1507981 2930635 ~ 2933935 (+)
G487133 NA other downstream 2551805 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 2977309 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3242199 4659584 ~ 4669322 (+)
G489634 NA other downstream 5272111 6694221 ~ 6700788 (+)

Expression


Co-expression Network