Gene
RNA
| Item | Value |
|---|---|
| gene id | G487872 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 1681360 ~ 1682396 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU559757 | True | 1004 | lncRNA | 0.37 | 2 | 1681360 | 1682396 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_01620065_01624298 | NA | coding | downstream | 56634 | 1619261 ~ 1624726 (-) |
| CI01000340_01610308_01614177 | NA | coding | downstream | 66449 | 1610230 ~ 1614911 (-) |
| CI01000340_01436981_01473643 | PKN2 | coding | downstream | 207717 | 1436389 ~ 1473643 (-) |
| CI01000340_01422577_01422959 | NA | coding | downstream | 258401 | 1422463 ~ 1422959 (-) |
| CI01000340_01400601_01408156 | LRRC8C | coding | downstream | 273204 | 1399456 ~ 1408156 (-) |
| CI01000340_01785945_01793672 | LMO4, LMO4B | coding | upstream | 103431 | 1785827 ~ 1793954 (-) |
| CI01000340_01839512_01846883 | NA | coding | upstream | 155881 | 1838277 ~ 1846893 (-) |
| CI01000340_01894781_01909824 | HS2ST1 | coding | upstream | 212278 | 1894674 ~ 1911359 (-) |
| CI01000340_01916883_01917263 | NA | coding | upstream | 233257 | 1915653 ~ 1917352 (-) |
| CI01000340_01952181_01975472 | NA | coding | upstream | 269119 | 1951515 ~ 1976286 (-) |
| G486406 | NA | non-coding | downstream | 123850 | 1557273 ~ 1557510 (-) |
| G486348 | NA | non-coding | downstream | 186718 | 1494439 ~ 1494642 (-) |
| G486276 | NA | non-coding | downstream | 248689 | 1432444 ~ 1432671 (-) |
| G486289 | NA | non-coding | downstream | 394429 | 1286635 ~ 1286931 (-) |
| G486267 | NA | non-coding | downstream | 429396 | 1250482 ~ 1251964 (-) |
| G487878 | NA | non-coding | upstream | 49647 | 1732043 ~ 1732280 (-) |
| G487881 | NA | non-coding | upstream | 63841 | 1746237 ~ 1746499 (-) |
| G487905 | NA | non-coding | upstream | 148406 | 1830802 ~ 1831023 (-) |
| G487918 | NA | non-coding | upstream | 241882 | 1924278 ~ 1925429 (-) |
| G487929 | NA | non-coding | upstream | 258931 | 1941327 ~ 1941535 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 889951 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 1355644 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 1599265 | 62780 ~ 82095 (-) |
| G487884 | NA | other | upstream | 213405 | 1895801 ~ 1902272 (-) |
| G488782 | NA | other | upstream | 2323409 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 2824800 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 2917824 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 3638357 | 5320753 ~ 5330215 (-) |
