G488102



Basic Information


Item Value
gene id G488102
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2194700 ~ 2194971 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU560006
GCTTGGCAAACAGCTTTGGAGAATTTGATGTTTCCCCATTCAAAGAGATAGGAACTGCACTTTGATGCCCGAGAGGCGTTTCAAAGATGGCCGCCGAGTGAAATGACTTGTCTTAAAGGGACTTTGTTCTAGTTCAGTTCTAAACAGTCTGGGTGATCAGAAGTCAGAAAAAAGACAAGATATGATAATAGAGATTATTCACTTATTCTATACACCGATTATTCAATTATACAGTTATACTAGATATTAAATGAGATATTAGTACAGTTCCG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU560006 True 272 lncRNA 0.37 1 2194700 2194971

Neighbor


gene id symbol gene type direction distance location
CI01000340_02172629_02189732 HDLBP, HDLBPA coding downstream 4968 2171683 ~ 2189732 (-)
CI01000340_02008099_02012700 SOX14.S, SOX14 coding downstream 182000 2008022 ~ 2012700 (-)
CI01000340_01952181_01975472 NA coding downstream 218414 1951515 ~ 1976286 (-)
CI01000340_01916883_01917263 NA coding downstream 277348 1915653 ~ 1917352 (-)
CI01000340_01894781_01909824 HS2ST1 coding downstream 283341 1894674 ~ 1911359 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding upstream 98043 2293014 ~ 2302947 (-)
CI01000340_02329631_02332000 DTYMK coding upstream 134635 2329606 ~ 2332000 (-)
CI01000340_02333476_02337529 AGXTA coding upstream 138131 2333102 ~ 2337529 (-)
CI01000340_02341068_02348409 NA coding upstream 145532 2340503 ~ 2348477 (-)
CI01000340_02567081_02567521 NA coding upstream 371766 2566737 ~ 2567643 (-)
G488101 NA non-coding downstream 150 2194326 ~ 2194550 (-)
G488096 NA non-coding downstream 28460 2165992 ~ 2166240 (-)
G487971 NA non-coding downstream 202062 1990574 ~ 1992638 (-)
G487942 NA non-coding downstream 219826 1974362 ~ 1974874 (-)
G487929 NA non-coding downstream 253165 1941327 ~ 1941535 (-)
G488103 NA non-coding upstream 139 2195110 ~ 2195384 (-)
G488104 NA non-coding upstream 2766 2197737 ~ 2198034 (-)
G488113 NA non-coding upstream 18218 2213189 ~ 2218915 (-)
G488114 NA non-coding upstream 26115 2221086 ~ 2221613 (-)
G488119 NA non-coding upstream 32382 2227353 ~ 2229293 (-)
G487884 NA other downstream 292428 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 1403291 786551 ~ 791409 (-)
G485786 NA other downstream 1868984 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 2112605 62780 ~ 82095 (-)
G488782 NA other upstream 1810834 4005805 ~ 4006448 (-)
G488862 NA other upstream 2312225 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 2405249 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 3125782 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 3988319 6095704 ~ 6194501 (-)

Expression



Co-expression Network