Gene
RNA
| Item | Value |
|---|---|
| gene id | G488113 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 2213189 ~ 2218915 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560018 | True | 413 | lncRNA | 0.46 | 2 | 2213189 | 2218915 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_02172629_02189732 | HDLBP, HDLBPA | coding | downstream | 23457 | 2171683 ~ 2189732 (-) |
| CI01000340_02008099_02012700 | SOX14.S, SOX14 | coding | downstream | 200489 | 2008022 ~ 2012700 (-) |
| CI01000340_01952181_01975472 | NA | coding | downstream | 236903 | 1951515 ~ 1976286 (-) |
| CI01000340_01916883_01917263 | NA | coding | downstream | 295837 | 1915653 ~ 1917352 (-) |
| CI01000340_01894781_01909824 | HS2ST1 | coding | downstream | 301830 | 1894674 ~ 1911359 (-) |
| CI01000340_02293072_02301920 | STK25B, STK25, STK25A | coding | upstream | 74099 | 2293014 ~ 2302947 (-) |
| CI01000340_02329631_02332000 | DTYMK | coding | upstream | 110691 | 2329606 ~ 2332000 (-) |
| CI01000340_02333476_02337529 | AGXTA | coding | upstream | 114187 | 2333102 ~ 2337529 (-) |
| CI01000340_02341068_02348409 | NA | coding | upstream | 121588 | 2340503 ~ 2348477 (-) |
| CI01000340_02567081_02567521 | NA | coding | upstream | 347822 | 2566737 ~ 2567643 (-) |
| G488104 | NA | non-coding | downstream | 15155 | 2197737 ~ 2198034 (-) |
| G488103 | NA | non-coding | downstream | 17805 | 2195110 ~ 2195384 (-) |
| G488102 | NA | non-coding | downstream | 18218 | 2194700 ~ 2194971 (-) |
| G488101 | NA | non-coding | downstream | 18639 | 2194326 ~ 2194550 (-) |
| G488096 | NA | non-coding | downstream | 46949 | 2165992 ~ 2166240 (-) |
| G488114 | NA | non-coding | upstream | 2171 | 2221086 ~ 2221613 (-) |
| G488119 | NA | non-coding | upstream | 8438 | 2227353 ~ 2229293 (-) |
| G488142 | NA | non-coding | upstream | 85536 | 2304451 ~ 2304769 (-) |
| G487958 | NA | non-coding | upstream | 118974 | 2337889 ~ 2338491 (-) |
| G487957 | NA | non-coding | upstream | 119679 | 2338594 ~ 2338987 (-) |
| G487884 | NA | other | downstream | 310917 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 1421780 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 1887473 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 2131094 | 62780 ~ 82095 (-) |
| G488782 | NA | other | upstream | 1786890 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 2288281 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 2381305 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 3101838 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 3964375 | 6095704 ~ 6194501 (-) |
