G488147


Basic Information

Item Value
gene id G488147
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2405312 ~ 2427227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU560055
TCATAGTGTTGCATAAGTTCCACATTTATTTCATATCTGACAATGTGTTAAGTGTACACAAACATTTGACTCATAATTCCAACACTCAGAAAGAGACATTGAACTACTGCCCACTGAAGATGGTACAAACCGGTTACAACTGCATATTACACCATTCACAGCAATCATGTTTATATACAAGGCAAGTAAAACTGAGAGAAAACGACAGAAAAAAATGCTTATGAATGGAGTCCGTGCATAACAGGAGAATGGAAGCACACAAATATTTGGTGTCGATAATGAGAACTGATTCATTCTTTCACTTTGGGTGGTGGTAAAATGGATACAATGTTTTTAGCTTGTAAACATGATAATGCGATGTTTTATGGAAATAGCTTGTAGAAATACAGGACAGGCTATAACATTAATAATTCCATTCAGCTCTCTGAAGTACTTTCTACAAGGTGCACAGACAAAAACTAAGACAATTCACATTTGCTTGTATGTACTAAAACTGAAAGTGATTCTTTTAACTCTCTATATTTTTTTAATAATTTTGTTGACAACGCACCTGCTATTACTATTACCATATGCACTTGTTTATAAAAGTAGTGGCATTACTTATATTTACTCTGAACTGGTCATGAAAGTGAAGTGAATCTGATTGACGCATAGAAAAAGCAGAAGGTGCATGAACTATTTTTCATAAACAGAACCTTTAGGGATTGAGAATCCTTTTAGGGATATGCCTTATGCTTTTACTCACAGAAATGGAATACCATCCTAAGTACCAATATTAGTAACTGAATTTTTGGAATTAGAAGTGTACATTTCATAGACAGATCAAGGCTTTCAGTAGAGGTTTGTTCAGGGTGTCAGATTCTTCTTATACTGAGCATGTGCTGTAGGTTGGCTGGCCTTAGTCATACTCATGTGCCTAAATCTTGCTGCCCTAGAGGCACCTCAGGTGATTTACAACCTGTTGATCTGTGCACTGAATATGCAGGTATGGATGAAAGTCTTGTGTTAGTTCGGCAAACTGCAGGATCATCCAATCATCTCACACCAAGCTGTCTGGCTTAACTATAATAAGCAGTGAAAGTGGAAGCAAGGGCTCTGCTTTAGTGACTGCCTTAGTCGAGGTCTGGCCCACAGGACTGCCATCAAATGTTTTTGCACTAAAAGTGTCTAAATCACAGCTGTTGGTATTATATAACTCGAAAATGTTCTTTCATATTCCATAAAATGTAGTTCGGCTGAAGTTTAATAACTATCAGCAATCTCAGCACAAATGGTTTCCTGTTTTTGACAATAAGCACAACAATCAGACCATCAAAAAATGGAATTTAAAATGTATTGTGTTGCCATCTATCAGCTCATCACATATTTTATATGATTATAATCACAAAAAATCAGACCAAAATGAGTTTTGGAACAATACTATGATGGAAGGGCTCATTTCTGGAGTCCATGGTGATGTTAGAGATGAGAAACTTGTCCCTCAAATGGAAAATGTTTCTGATTGAATAAGTAGATTTGTTTTGTTCATTTGCAAGTAATATGAAAAAATCATTTACACCATCTAGATATGCTTAGAAATCTCAAAACCTAGTCATATGTAGGGCATGTGCAATATGAAAACTATCTAAAAACTAATTGAAACTGATTTTGTCTGTGCACATAAATGATTACACACAAAGAGAAAGGGTGGTACTGATGGGTGGGCCTGAAAGTGGATGATGAAAATTGTAAAACAAAAACAGAGTAGATGATGCAAGAGGCACAAATCGTATATCATCACTCTCTGGGATGTGTATAGAAAATTCCATCAGTACTGTACATTTGATTTGTTCTAACAAACTTCTAAACCATCCATTTTCCAAAACTGACCACTGTACAAACACTCATGTAGGATTCTGGGCAAAAATGATTTTTCTCCACCTGATAATTTTCTTTCTCTACCAAAACTAGTTAACATATCTAAAAAGTAAAATTCAAGTAACCTACATGTAATAGCAGCTATCCCAGCATTCACTTCTAAACTGTTCCCCAAATGCATTTCATCGTGTCGGGGGAATGAGAGCAGTGCAGTCAGTAAAACGGAGGCTAGTCAACTCATGATAAAAAAGTGCCATATGCAGAAATTGCACTGTACTTCTTCAAAAATATTACAGTCTTTGTCAATAAATACATGCTGAAATAAATAAAAACATGTTAAATAAATACCTAACTAGATAAGACTTTAATAGAAATTTAAAAAAAATAAATTAGACTGATATAAGATCATTTGGGGATACCGATAATTTTTTATATAAAATATTAGACTGGATTATGATACATTTTAGATAAATCTACTGACCAGTACTCCAACAAAAATAGGCCAAATCTTTATAATGATCATCATACAGAGATATGCGAATGCAACCGTTTTCCGTTGCCAAATTTTTCCTCATGCGTCCTGATTATTTTGAAATCTTTATGCATTTCACGGCCTTACAAGGGAAACATTATAGAGGTATATGAATATTTATGATGGGTTGTACTGTGTCCAAGAACTGCACTTAAAGAGAGTAAGAGCGCAATATGATGTGATTCATCTGCTCCTTGCTAAGAACTGCTTATCATTGATCAATTCTATCCTCCATAGCCAAGAGATGAATAAACATATGGTCTGCTGACTTAAATACTGACCAGTTTTAAACTCATAGACTTGCAAGTCAGTAGTAGCACAATAAGGCCATGTGATCCATTTTCCCACCAAACTCAAGATACGGACGTCACTCTTCACAGTACCAAATTTAGATGTGTTTGCATGAGCTGTCAGCTTCAGAATTAGAAATTCCCATCACCAACTTTCTAAAATGTTGCTGAAGACTACATAAGCATACTATCTCTAACCAAATAAAGTAGTTAGCCTGTTCCGTTGGCGCTATAAGTTGAATATTTAGGCCACTGTAGATGCACAACAAAGGGGCCTTTAAGATACAGGTGCACAGTTGGTGCTAGTGTGGGCAGGTGCAGGAACACACATGAAGGAAACAGGGGGTCAGAGAGTTGATTGGGCACAGAAACTGGGGGATCTGTCAGTAGATCTATTTACAAGTATAGTCCTTTGTGTTTTTTGTCCTCGAAGAGTTGTACAGTAGGTTTACATGTGGTGGGCTCAAAACCTCATCTGCCCGGCTCTTCTTCTGGACAGTTTAGACCTGATAGATCCAGCAAGCAGAGGGTTAAAGGCATACAGCCAGTCATGCATCTCCTTGTCATTACTGGCTTGAAGGAGTATCCCACGATGCTCTGTGCATACCGCAAATGTGTAGGGGGTCTTCAGCATGGCCTGCTGGTCTTCGCTGTACTCCACTTGTGCTGAAGACAGGTTAAGAATGGCCCTTTCCACTGTGTCTCTCTCTGTGTTGTAGATGTAGACATAAGGCCGGCGTACCACCACATATCTCTTAACCCAGCCATTACTGTGGGGTTCCAGGAAGTGCAAATAGCCTTTCTTTGACACAATTGGCTGACACGAATTTCCTGAATATCTGGCACAAAAGTGTGGGTCCTTGATCTGGACTGTTGAGGAGACTTCTTGCCCTCTGTTTCAGACTCAGGGATGGGGCTGACAGCACGAGATCGAGGTGTTGGGGGTCTGAGTTCAGTGTTGTGGCCGTAGCGTCCCTCCACAAGTGAGGGACATGTGGAGGACGGTGTGAGGGTGCTTTCAGCACACACTGAGGCTGAGTCTTTCAAAAGAGTTACTGACATCTCACTCAACTTGCTCTCACTGGCGCTAACACACACATGGCTGTAGTCCCTGTTAAAGGTGTGGTTAAGCAAACGCAGACACTTTGCAGCCAGCTCCTTCTGCCTCTCATTGGGTGTGTCGGGGCCGGGACCGGGGCTGTGGCCCAGGCCCAGGTGGGTGGAGGGGGAAGAGGACTCGGTTAGATCTTCACTCCCGCAGGACAGCAGCGACTCCTGGCCCAGCAGCAGGGTGGACTCCAGCTTCTCCCTAAGGAGGAGGTAGTGTCTGGTTTTCCACCTCCTGCAGGAGGCTCAATTTTTCCAGCTCCCACTGATGGTCCAGGATGAGGCTGTCACTGCGGGGTCTCCAGCCAGCCAGGTTCTCCTCCCCTCGCACGTACGCCACCGACGTATCCAGCACCCTCCTGCGTCGTCTTTGCATTCCTGGGCTCCCTGCATCAGCCAGGTGGCACAGACTGAGCTCATACACGCCAGTTACACGGTTTCCTTCACATGGCCTCAAGGTGCCACTGCTGAAGAGGTTCCTGATGGAGCGAGATGCCGGGAGCTTGGCGTCTCTTGAGTAGAACACCATGCATAAGTCTTTGGTTATCACTGTGGGCTGTGTGCAGTTCTCCATCTCCAGGTATGCAGACAGAGTCATGTAGATTTTCTCTCCATAAGGAGTGACACGGTTTAGCAGCAAAGAGTTGTGCATGGATGAATCCCAAGCAGCATCGAAACGGAAGAATGTCCTAGGCATGTCCGAATCAAGAAACTGTCTGTCATCTTGTGTGGGTCGAATGTATCCTGCAGACAGTATGTTAAGAGAGAGAATATTGGGGTCGATGATTGTCTCATCTGCTTCAGGCGTGTTCCGGATGCGCCCTACAACCAGCTCTCGCACTTCCTTCCACTCAATATCTCTTCCTGTCTCATGTACTATGGTGACTGTCACTCTCCTTTGGATGCCCTGATGTAACATGAATGTGCCATGGCAGGGCATGCCTACCCGGTGGTCCACTACGGCTGGAATATAGTCTCCATTGGCCTCAAGCTCACAGATTTCAAAGAAGACCATCAGGTCATATTTACAGTGGCACGGTCCTGCTGTGGGTCGTGTGAGAGCTGTCAGTTTGGTGGCAGGTACTTTGAAGAAAATAGAGAAAGAAAGAACGAGTGTCAAATCAATATTGAGTTAATCATAAACCAAAGGACATAATTCAATGGCAGATGAGAGGGATACTAGAGTTTCACAGGCGAGAGGAAGATATGGATCACAGTATAAGAGGAGGAATAGAGCATAGTTAGAGAGGACCATGAGTGGAAGATCAGGGGTCCGATGTAAAGGCACACTGCTGTTAAGATGAATAAAGTCAAGTGAATAACAGTGATCCCTAAACATCTGCACATGCTAAGCAGAATTATTAAAAGAATAGTTCACCTTAAAATGAAAATGCTCTCATTATTTTCTCACCCTCATGTCGT
>TU560054
TCATAGTGTTGCATAAGTTCCACATTTATTTCATATCTGACAATGTGTTAAGTGTACACAAACATTTGACTCATAATTCCAACACTCAGAAAGAGACATTGAACTACTGCCCACTGAAGATGGTACAAACCGGTTACAACTGCATATTACACCATTCACAGCAATCATGTTTATATACAAGGCAAGTAAAACTGAGAGAAAACGACAGAAAAAAATGCTTATGAATGGAGTCCGTGCATAACAGGAGAATGGAAGCACACAAATATTTGGTGTCGATAATGAGAACTGATTCATTCTTTCACTTTGGGTGGTGGTAAAATGGATACAATGTTTTTAGCTTGTAAACATGATAATGCGATGTTTTATGGAAATAGCTTGTAGAAATACAGGACAGGCTATAACATTAATAATTCCATTCAGCTCTCTGAAGTACTTTCTACAAGGTGCACAGACAAAAACTAAGACAATTCACATTTGCTTGTATGTACTAAAACTGAAAGTGATTCTTTTAACTCTCTATATTTTTTTAATAATTTTGTTGACAACGCACCTGCTATTACTATTACCATATGCACTTGTTTATAAAAGTAGTGGCATTACTTATATTTACTCTGAACTGGTCATGAAAGTGAAGTGAATCTGATTGACGCATAGAAAAAGCAGAAGGTGCATGAACTATTTTTCATAAACAGAACCTTTAGGGATTGAGAATCCTTTTAGGGATATGCCTTATGCTTTTACTCACAGAAATGGAATACCATCCTAAGTACCAATATTAGTAACTGAATTTTTGGAATTAGAAGTGTACATTTCATAGACAGATCAAGGCTTTCAGTAGAGGTTTGTTCAGGGTGTCAGATTCTTCTTATACTGAGCATGTGCTGTAGGTTGGCTGGCCTTAGTCATACTCATGTGCCTAAATCTTGCTGCCCTAGAGGCACCTCAGGTGATTTACAACCTGTTGATCTGTGCACTGAATATGCAGGTATGGATGAAAGTCTTGTGTTAGTTCGGCAAACTGCAGGATCATCCAATCATCTCACACCAAGCTGTCTGGCTTAACTATAATAAGCAGTGAAAGTGGAAGCAAGGGCTCTGCTTTAGTGACTGCCTTAGTCGAGGTCTGGCCCACAGGACTGCCATCAAATGTTTTTGCACTAAAAGTGTCTAAATCACAGCTGTTGGTATTATATAACTCGAAAATGTTCTTTCATATTCCATAAAATGTAGTTCGGCTGAAGTTTAATAACTATCAGCAATCTCAGCACAAATGGTTTCCTGTTTTTGACAATAAGCACAACAATCAGACCATCAAAAAATGGAATTTAAAATGTATTGTGTTGCCATCTATCAGCTCATCACATATTTTATATGATTATAATCACAAAAAATCAGACCAAAATGAGTTTTGGAACAATACTATGATGGAAGGGCTCATTTCTGGAGTCCATGGTGATGTTAGAGATGAGAAACTTGTCCCTCAAATGGAAAATGTTTCTGATTGAATAAGTAGATTTGTTTTGTTCATTTGCAAGTAATATGAAAAAATCATTTACACCATCTAGATATGCTTAGAAATCTCAAAACCTAGTCATATGTAGGGCATGTGCAATATGAAAACTATCTAAAAACTAATTGAAACTGATTTTGTCTGTGCACATAAATGATTACACACAAAGAGAAAGGGTGGTACTGATGGGTGGGCCTGAAAGTGGATGATGAAAATTGTAAAACAAAAACAGAGTAGATGATGCAAGAGGCACAAATCGTATATCATCACTCTCTGGGATGTGTATAGAAAATTCCATCAGTACTGTACATTTGATTTGTTCTAACAAACTTCTAAACCATCCATTTTCCAAAACTGACCACTGTACAAACACTCATGTAGGATTCTGGGCAAAAATGATTTTTCTCCACCTGATAATTTTCTTTCTCTACCAAAACTAGTTAACATATCTAAAAAGTAAAATTCAAGTAACCTACATGTAATAGCAGCTATCCCAGCATTCACTTCTAAACTGTTCCCCAAATGCATTTCATCGTGTCGGGGGAATGAGAGCAGTGCAGTCAGTAAAACGGAGGCTAGTCAACTCATGATAAAAAAGTGCCATATGCAGAAATTGCACTGTACTTCTTCAAAAATATTACAGTCTTTGTCAATAAATACATGCTGAAATAAATAAAAACATGTTAAATAAATACCTAACTAGATAAGACTTTAATAGAAATTTAAAAAAAATAAATTAGACTGATATAAGATCATTTGGGGATACCGATAATTTTTTATATAAAATATTAGACTGGATTATGATACATTTTAGATAAATCTACTGACCAGTACTCCAACAAAAATAGGCCAAATCTTTATAATGATCATCATACAGAGATATGCGAATGCAACCGTTTTCCGTTGCCAAATTTTTCCTCATGCGTCCTGATTATTTTGAAATCTTTATGCATTTCACGGCCTTACAAGGGAAACATTATAGAGGTATATGAATATTTATGATGGGTTGTACTGTGTCCAAGAACTGCACTTAAAGAGAGTAAGAGCGCAATATGATGTGATTCATCTGCTCCTTGCTAAGAACTGCTTATCATTGATCAATTCTATCCTCCATAGCCAAGAGATGAATAAACATATGGTCTGCTGACTTAAATACTGACCAGTTTTAAACTCATAGACTTGCAAGTCAGTAGTAGCACAATAAGGCCATGTGATCCATTTTCCCACCAAACTCAAGATACGGACGTCACTCTTCACAGTACCAAATTTAGATGTGTTTGCATGAGCTGTCAGCTTCAGAATTAGAAATTCCCATCACCAACTTTCTAAAATGTTGCTGAAGACTACATAAGCATACTATCTCTAACCAAATAAAGTAGTTAGCCTGTTCCGTTGGCGCTATAAGTTGAATATTTAGGCCACTGTAGATGCACAACAAAGGGGCCTTTAAGATACAGGTGCACAGTTGGTGCTAGTGTGGGCAGGTGCAGGAACACACATGAAGGAAACAGGGGGTCAGAGAGTTGATTGGGCACAGAAACTGGGGGATCTGTCAGTAGATCTATTTACAAGTATAGTCCTTTGTGTTTTTTGTCCTCGAAGAGTTGTACAGTAGGTTTACATGTGGTGGGCTCAAAACCTCATCTGCCCGGCTCTTCTTCTGGACAGTTTAGACCTGATAGATCCAGCAAGCAGAGGGTTAAAGGCATACAGCCAGTCATGCATCTCCTTGTCATTACTGGCTTGAAGGAGTATCCCACGATGCTCTGTGCATACCGCAAATGTGTAGGGGGTCTTCAGCATGGCCTGCTGGTCTTCGCTGTACTCCACTTGTGCTGAAGACAGGTTAAGAATGGCCCTTTCCACTGTGTCTCTCTCTGTGTTGTAGATGTAGACATAAGGCCGGCGTACCACCACATATCTCTTAACCCAGCCATTACTGTGGGGTTCCAGGAAGTGCAAATAGCCTTTCTTTGACACAATTGGCTGACACGAATTTCCTGAATATCTGGCACAAAAGTGTGGGTCCTTGATCTGGACTGTTGAGGAGACTTCTTGCCCTCTGTTTCAGACTCAGGGATGGGGCTGACAGCACGAGATCGAGGTGTTGGGGGTCTGAGTTCAGTGTTGTGGCCGTAGCGTCCCTCCACAAGTGAGGGACATGTGGAGGACGGTGTGAGGGTGCTTTCAGCACACACTGAGGCTGAGTCTTTCAAAAGAGTTACTGACATCTCACTCAACTTGCTCTCACTGGCGCTAACACACACATGGCTGTAGTCCCTGTTAAAGGTGTGGTTAAGCAAACGCAGACACTTTGCAGCCAGCTCCTTCTGCCTCTCATTGGGTGTGTCGGGGCCGGGACCGGGGCTGTGGCCCAGGCCCAGGTGGGTGGAGGGGGAAGAGGACTCGGTTAGATCTTCACTCCCGCAGGACAGCAGCGACTCCTGGCCCAGCAGCAGGGTGGACTCCAGCTTCTCCCTAAGGAGGAGGTAGTGTCTGGTTTTCTCCACCTCCTGCAGGAGGCTCAATTTTTCCAGCTCCCACTGATGGTCCAGGATGAGGCTGTCACTGCGGGGTCTCCAGCCAGCCAGGTTCTCCTCCCCTCGCACGTACGCCACCGACGTATCCAGCACCCTCCTGCGTCGTCTTTGCATTCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU560055 False 5208 lncRNA 0.42 16 2405312 2427227
TU560054 True 4169 lncRNA 0.41 8 2418084 2427227

Neighbor

gene id symbol gene type direction distance location
CI01000340_02341068_02348409 NA coding downstream 56835 2340503 ~ 2348477 (-)
CI01000340_02333476_02337529 AGXTA coding downstream 67783 2333102 ~ 2337529 (-)
CI01000340_02329631_02332000 DTYMK coding downstream 73312 2329606 ~ 2332000 (-)
CI01000340_02293072_02301920 STK25B, STK25, STK25A coding downstream 102365 2293014 ~ 2302947 (-)
CI01000340_02172629_02189732 HDLBP, HDLBPA coding downstream 215580 2171683 ~ 2189732 (-)
CI01000340_02567081_02567521 NA coding upstream 139510 2566737 ~ 2567643 (-)
CI01000340_02936853_02939837 BCL6A, BCL6 coding upstream 508410 2935637 ~ 2939837 (-)
CI01000340_03342324_03363204 TOMM70, TOMM70A coding upstream 915074 3342301 ~ 3363619 (-)
CI01000340_03379959_03401892 GFI1AB, GFI1 coding upstream 952059 3379286 ~ 3401952 (-)
CI01000340_03403238_03403692 NA coding upstream 975996 3403223 ~ 3403692 (-)
G487961 NA non-coding downstream 65433 2339538 ~ 2339879 (-)
G487957 NA non-coding downstream 66325 2338594 ~ 2338987 (-)
G487958 NA non-coding downstream 66821 2337889 ~ 2338491 (-)
G488142 NA non-coding downstream 100543 2304451 ~ 2304769 (-)
G488119 NA non-coding downstream 176019 2227353 ~ 2229293 (-)
G488179 NA non-coding upstream 49728 2476955 ~ 2477260 (-)
G488184 NA non-coding upstream 72369 2499596 ~ 2499844 (-)
G488186 NA non-coding upstream 72955 2500182 ~ 2500405 (-)
G488187 NA non-coding upstream 74058 2501285 ~ 2501500 (-)
G488193 NA non-coding upstream 81680 2508907 ~ 2509117 (-)
G487884 NA other downstream 503040 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 1613903 786551 ~ 791409 (-)
G485786 NA other downstream 2079596 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 2323217 62780 ~ 82095 (-)
G488782 NA other upstream 1578578 4005805 ~ 4006448 (-)
G488862 NA other upstream 2079969 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 2172993 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 2893526 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 3756063 6095704 ~ 6194501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G55326 NA non-coding CM030126.1 CM030126.1 28721540 ~ 28727970 (-)