Gene
RNA
| Item | Value |
|---|---|
| gene id | G488207 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 2554516 ~ 2558467 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560132 | False | 692 | lncRNA | 0.45 | 3 | 2554516 | 2558467 |
| TU560133 | True | 679 | lncRNA | 0.45 | 3 | 2554516 | 2558467 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_02341068_02348409 | NA | coding | downstream | 206039 | 2340503 ~ 2348477 (-) |
| CI01000340_02333476_02337529 | AGXTA | coding | downstream | 216987 | 2333102 ~ 2337529 (-) |
| CI01000340_02329631_02332000 | DTYMK | coding | downstream | 222516 | 2329606 ~ 2332000 (-) |
| CI01000340_02293072_02301920 | STK25B, STK25, STK25A | coding | downstream | 251569 | 2293014 ~ 2302947 (-) |
| CI01000340_02172629_02189732 | HDLBP, HDLBPA | coding | downstream | 364784 | 2171683 ~ 2189732 (-) |
| CI01000340_02567081_02567521 | NA | coding | upstream | 8270 | 2566737 ~ 2567643 (-) |
| CI01000340_02936853_02939837 | BCL6A, BCL6 | coding | upstream | 377170 | 2935637 ~ 2939837 (-) |
| CI01000340_03342324_03363204 | TOMM70, TOMM70A | coding | upstream | 783834 | 3342301 ~ 3363619 (-) |
| CI01000340_03379959_03401892 | GFI1AB, GFI1 | coding | upstream | 820819 | 3379286 ~ 3401952 (-) |
| CI01000340_03403238_03403692 | NA | coding | upstream | 844756 | 3403223 ~ 3403692 (-) |
| G488201 | NA | non-coding | downstream | 34957 | 2518832 ~ 2519559 (-) |
| G488197 | NA | non-coding | downstream | 39212 | 2515103 ~ 2515304 (-) |
| G488196 | NA | non-coding | downstream | 42848 | 2511446 ~ 2511668 (-) |
| G488193 | NA | non-coding | downstream | 45399 | 2508907 ~ 2509117 (-) |
| G488187 | NA | non-coding | downstream | 53016 | 2501285 ~ 2501500 (-) |
| G488247 | NA | non-coding | upstream | 75106 | 2633573 ~ 2633817 (-) |
| G488251 | NA | non-coding | upstream | 89887 | 2648354 ~ 2654655 (-) |
| G488259 | NA | non-coding | upstream | 100184 | 2658651 ~ 2751966 (-) |
| G488276 | NA | non-coding | upstream | 143934 | 2702401 ~ 2769316 (-) |
| G488306 | NA | non-coding | upstream | 208701 | 2767168 ~ 2773417 (-) |
| G487884 | NA | other | downstream | 652244 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 1763107 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 2228800 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 2472421 | 62780 ~ 82095 (-) |
| G488782 | NA | other | upstream | 1447338 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 1948729 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 2041753 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 2762286 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 3624823 | 6095704 ~ 6194501 (-) |
