G486904


Basic Information

Item Value
gene id G486904
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2815960 ~ 2816177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558681
GTTCGACCAAATATTGTCCAATCCTAACAAACCATACATCAATGGAAAGCTTATTTATTTATTTAGCTTTTAGGTGATATATAAATCTCAATTTAAAAAAAATCACTCTAAAACTGGTTTTGTGGTCCAGGATCACATATAAGAATTAAGGTAGAAAATCATCCCTATTAAAGTAGCATATCTGACAAAGTAACATATCTAAAAAATGAATCTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558681 True 218 lncRNA 0.28 1 2815960 2816177

Neighbor

gene id symbol gene type direction distance location
CI01000340_02786463_02787025 NA coding upstream 28025 2785907 ~ 2787935 (+)
CI01000340_02767940_02783266 CEP63 coding upstream 32240 2766642 ~ 2783720 (+)
CI01000340_02719436_02720381 RAB6A coding upstream 95556 2719436 ~ 2720404 (+)
CI01000340_02643819_02656971 NA coding upstream 158754 2643819 ~ 2657206 (+)
CI01000340_02592385_02630762 RYK coding upstream 185152 2591634 ~ 2630808 (+)
CI01000340_02817499_02825652 AMOTL2A, AMOTL2 coding downstream 1117 2817294 ~ 2825747 (+)
CI01000340_02846209_02868305 SAP130A coding downstream 30032 2846209 ~ 2868859 (+)
CI01000340_02870871_02899752 NA coding downstream 54694 2870871 ~ 2900011 (+)
CI01000340_02905987_02907006 GPR17 coding downstream 88951 2905128 ~ 2907074 (+)
CI01000340_02911658_02928746 INPP5D coding downstream 94796 2910973 ~ 2929344 (+)
G486899 NA non-coding upstream 4457 2811275 ~ 2811503 (+)
G486891 NA non-coding upstream 21404 2793806 ~ 2794556 (+)
G486802 NA non-coding upstream 78753 2736681 ~ 2737207 (+)
G486795 NA non-coding upstream 88159 2726618 ~ 2727801 (+)
G486788 NA non-coding upstream 101011 2713727 ~ 2714949 (+)
G486913 NA non-coding downstream 25535 2841712 ~ 2895831 (+)
G486927 NA non-coding downstream 94084 2910261 ~ 2910542 (+)
CI01000340_02930635_02933799 LSM2 non-coding downstream 116527 2930635 ~ 2933935 (+)
G486858 NA non-coding downstream 148118 2964295 ~ 2964607 (+)
G486929 NA non-coding downstream 164409 2980586 ~ 2980904 (+)
CI01000340_00312480_00313262 NA other upstream 2502715 312212 ~ 313534 (+)
G485427 NA other upstream 2648326 163286 ~ 167634 (+)
G485373 NA other upstream 2702191 106885 ~ 113769 (+)
G487133 NA other downstream 1157738 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 1583242 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1848132 4659584 ~ 4669322 (+)
G489634 NA other downstream 3878044 6694221 ~ 6700788 (+)

Expression


Co-expression Network