G486913


Basic Information

Item Value
gene id G486913
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2841712 ~ 2895831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558690
TTAAAAAAAAAAAAAAATATATATATATATATACCACAAATGCTCATCTTGCACTAGCTCTGCGATGCGCCACGCATTACGTAATCACGTTGGAAAGGTCACGCATGACATAGGCGGAAGTACCGCGGGCGAAAAGCAATTTTTTTAGAAAATGGCCGATTGTTTCTCTAGATAAGACCCTCATTCCTCGTCTGGGATTGTGTAGAGTCCTTTGAAGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558690 True 221 lncRNA 0.41 2 2841712 2895831

Neighbor

gene id symbol gene type direction distance location
CI01000340_02817499_02825652 AMOTL2A, AMOTL2 coding upstream 15965 2817294 ~ 2825747 (+)
CI01000340_02786463_02787025 NA coding upstream 53777 2785907 ~ 2787935 (+)
CI01000340_02767940_02783266 CEP63 coding upstream 57992 2766642 ~ 2783720 (+)
CI01000340_02719436_02720381 RAB6A coding upstream 121308 2719436 ~ 2720404 (+)
CI01000340_02643819_02656971 NA coding upstream 184506 2643819 ~ 2657206 (+)
CI01000340_02905987_02907006 GPR17 coding downstream 9297 2905128 ~ 2907074 (+)
CI01000340_02911658_02928746 INPP5D coding downstream 15142 2910973 ~ 2929344 (+)
CI01000340_02930635_02933799 LSM2 coding downstream 34804 2930635 ~ 2933935 (+)
CI01000340_03053157_03201683 LPP coding downstream 157326 3053157 ~ 3201683 (+)
CI01000340_03242647_03264271 NA coding downstream 346816 3242647 ~ 3264850 (+)
G486904 NA non-coding upstream 25535 2815960 ~ 2816177 (+)
G486899 NA non-coding upstream 30209 2811275 ~ 2811503 (+)
G486891 NA non-coding upstream 47156 2793806 ~ 2794556 (+)
G486802 NA non-coding upstream 104505 2736681 ~ 2737207 (+)
G486795 NA non-coding upstream 113911 2726618 ~ 2727801 (+)
G486927 NA non-coding downstream 14430 2910261 ~ 2910542 (+)
G486858 NA non-coding downstream 68464 2964295 ~ 2964607 (+)
G486929 NA non-coding downstream 84755 2980586 ~ 2980904 (+)
G486948 NA non-coding downstream 325755 3221586 ~ 3221789 (+)
CI01000340_00312480_00313262 NA other upstream 2528467 312212 ~ 313534 (+)
G485427 NA other upstream 2674078 163286 ~ 167634 (+)
G485373 NA other upstream 2727943 106885 ~ 113769 (+)
G487133 NA other downstream 1078084 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 1503588 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1768478 4659584 ~ 4669322 (+)
G489634 NA other downstream 3798390 6694221 ~ 6700788 (+)

Expression


Co-expression Network