G486927


Basic Information

Item Value
gene id G486927
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2910261 ~ 2910542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558704
CCCATGAAAGGTGCAATTAGTACCTTAGAGTAGTAATAAGTATCCTTACAGTACTACCAAAGACTATAGAATAACACAAGACGCGTCACTTGTATTGTTTTGAATGGAAGAAAGTGCAATGCGCAATATGGCCGAATAAGTCCCGCCTTCTAAATAAGAGCCAGTCACCGATTGGTAAAGTCATCGAGTCACTGCAGCGTCCGTTAGAAGCTCCGGTTCCTATAGAAACAGTCAGATGCGCACTTCCTATAGAGACGCACACACTTGGGATTGCGCATTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558704 True 282 lncRNA 0.44 1 2910261 2910542

Neighbor

gene id symbol gene type direction distance location
CI01000340_02905987_02907006 GPR17 coding upstream 3187 2905128 ~ 2907074 (+)
CI01000340_02870871_02899752 NA coding upstream 10250 2870871 ~ 2900011 (+)
CI01000340_02846209_02868305 SAP130A coding upstream 41402 2846209 ~ 2868859 (+)
CI01000340_02817499_02825652 AMOTL2A, AMOTL2 coding upstream 84514 2817294 ~ 2825747 (+)
CI01000340_02786463_02787025 NA coding upstream 122326 2785907 ~ 2787935 (+)
CI01000340_02911658_02928746 INPP5D coding downstream 431 2910973 ~ 2929344 (+)
CI01000340_02930635_02933799 LSM2 coding downstream 20093 2930635 ~ 2933935 (+)
CI01000340_03053157_03201683 LPP coding downstream 142615 3053157 ~ 3201683 (+)
CI01000340_03242647_03264271 NA coding downstream 332105 3242647 ~ 3264850 (+)
CI01000340_03291151_03315214 NA coding downstream 380105 3290647 ~ 3315757 (+)
G486913 NA non-coding upstream 14430 2841712 ~ 2895831 (+)
G486904 NA non-coding upstream 94084 2815960 ~ 2816177 (+)
G486899 NA non-coding upstream 98758 2811275 ~ 2811503 (+)
G486891 NA non-coding upstream 115705 2793806 ~ 2794556 (+)
G486802 NA non-coding upstream 173054 2736681 ~ 2737207 (+)
G486858 NA non-coding downstream 53753 2964295 ~ 2964607 (+)
G486929 NA non-coding downstream 70044 2980586 ~ 2980904 (+)
G486948 NA non-coding downstream 311044 3221586 ~ 3221789 (+)
G486965 NA non-coding downstream 345552 3256094 ~ 3256816 (+)
CI01000340_00312480_00313262 NA other upstream 2597016 312212 ~ 313534 (+)
G485427 NA other upstream 2742627 163286 ~ 167634 (+)
G485373 NA other upstream 2796492 106885 ~ 113769 (+)
G487133 NA other downstream 1063373 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 1488877 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1753767 4659584 ~ 4669322 (+)
G489634 NA other downstream 3783679 6694221 ~ 6700788 (+)

Expression


Co-expression Network