Gene
RNA
| Item | Value |
|---|---|
| gene id | G488341 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 2943221 ~ 2945567 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560295 | False | 2274 | lncRNA | 0.37 | 1 | 2943221 | 2945494 |
| TU560296 | True | 2298 | lncRNA | 0.36 | 1 | 2943270 | 2945567 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_02936853_02939837 | BCL6A, BCL6 | coding | downstream | 3384 | 2935637 ~ 2939837 (-) |
| CI01000340_02567081_02567521 | NA | coding | downstream | 375578 | 2566737 ~ 2567643 (-) |
| CI01000340_02341068_02348409 | NA | coding | downstream | 594744 | 2340503 ~ 2348477 (-) |
| CI01000340_02333476_02337529 | AGXTA | coding | downstream | 605692 | 2333102 ~ 2337529 (-) |
| CI01000340_02329631_02332000 | DTYMK | coding | downstream | 611221 | 2329606 ~ 2332000 (-) |
| CI01000340_03342324_03363204 | TOMM70, TOMM70A | coding | upstream | 396734 | 3342301 ~ 3363619 (-) |
| CI01000340_03379959_03401892 | GFI1AB, GFI1 | coding | upstream | 433719 | 3379286 ~ 3401952 (-) |
| CI01000340_03403238_03403692 | NA | coding | upstream | 457656 | 3403223 ~ 3403692 (-) |
| CI01000340_03406706_03449487 | EVI5 | coding | upstream | 460907 | 3406474 ~ 3449487 (-) |
| CI01000340_03474617_03478517 | FAM69AB, FAM69A | coding | upstream | 528393 | 3473960 ~ 3478517 (-) |
| G488378 | NA | non-coding | downstream | 8566 | 2934342 ~ 2934655 (-) |
| G488334 | NA | non-coding | downstream | 14536 | 2925754 ~ 2928685 (-) |
| G488371 | NA | non-coding | downstream | 34602 | 2905985 ~ 2908619 (-) |
| G488359 | NA | non-coding | downstream | 84978 | 2855259 ~ 2858243 (-) |
| G488346 | NA | non-coding | downstream | 110016 | 2832983 ~ 2833205 (-) |
| G488384 | NA | non-coding | upstream | 18731 | 2964298 ~ 2964585 (-) |
| G488387 | NA | non-coding | upstream | 31524 | 2977091 ~ 2977767 (-) |
| G488388 | NA | non-coding | upstream | 32524 | 2978091 ~ 2978316 (-) |
| G488392 | NA | non-coding | upstream | 35777 | 2981344 ~ 3053730 (-) |
| G488395 | NA | non-coding | upstream | 75580 | 3021147 ~ 3044942 (-) |
| G487884 | NA | other | downstream | 1040949 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 2151812 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 2617505 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 2861126 | 62780 ~ 82095 (-) |
| G488782 | NA | other | upstream | 1060238 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 1561629 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 1654653 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 2375186 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 3237723 | 6095704 ~ 6194501 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | G52817 | NA | non-coding | CM030126.1 | CM030126.1 | 15953048 ~ 15955372 (+) |
| tiger barb (Puntius tetrazona) | G44640 | NA | non-coding | NC_056704.1 | CM032073.1 | 13093856 ~ 13095910 (+) |
| mexican tetra (Astyanax mexicanus) | G48936 | NA | non-coding | NC_035902.1 | CM008305.1 | 1996411 ~ 1997862 (+) |
