G486997


Basic Information

Item Value
gene id G486997
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3391700 ~ 3392122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558788
GGTAGTACAACTAGATCTGTTGTATTGAATTTAAAAAGTTTTAATTATATTTTGCTACAAAGTATTTTAAAGATTTTGAAGTGTCAAAAGGTCTTTCGGTTTAACCGTCCAAAGGCCAATACAGCCATTTCATTTGTGATTAAAATATCTTAAAATGTAATAAATGTATATATTTTTTTATTCTGGCATGATTTTATAACATCATATATCAACAAAGTGCAAAATGGTATTAAAATTACGTGTAGAAGTCGTTGCTTTGTTATGAGAAAGAATGTCTGGAAAAATGAATTTCATTGATGTCATTCGGAGTAACCAATATAAAGGGACCATTTTGGATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGGACCACATGGTCATGAAGCAAAGTAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558788 True 423 lncRNA 0.31 1 3391700 3392122

Neighbor

gene id symbol gene type direction distance location
CI01000340_03370316_03378878 NA coding upstream 12700 3370275 ~ 3379000 (+)
CI01000340_03320562_03329314 TP63 coding upstream 62018 3320469 ~ 3329682 (+)
CI01000340_03291151_03315214 NA coding upstream 75943 3290647 ~ 3315757 (+)
CI01000340_03242647_03264271 NA coding upstream 126850 3242647 ~ 3264850 (+)
CI01000340_03053157_03201683 LPP coding upstream 190017 3053157 ~ 3201683 (+)
CI01000340_03471633_03472401 RPL5A, RPL5B, RPL5 coding downstream 79511 3471633 ~ 3472451 (+)
CI01000340_03552817_03560264 NA coding downstream 160227 3552349 ~ 3560324 (+)
CI01000340_03601425_03606062 NA coding downstream 208371 3600493 ~ 3606138 (+)
CI01000340_03616496_03620617 NA coding downstream 224374 3616496 ~ 3620970 (+)
CI01000340_03662829_03666784 ACTL6A coding downstream 270638 3662760 ~ 3666784 (+)
G486996 NA non-coding upstream 3189 3388297 ~ 3388511 (+)
G486991 NA non-coding upstream 14197 3377045 ~ 3377503 (+)
G486990 NA non-coding upstream 14690 3376720 ~ 3377010 (+)
G486986 NA non-coding upstream 20874 3367021 ~ 3370826 (+)
G486972 NA non-coding upstream 114586 3276913 ~ 3277114 (+)
G486847 NA non-coding downstream 17051 3409173 ~ 3412656 (+)
G486856 NA non-coding downstream 129444 3521566 ~ 3523856 (+)
G486865 NA non-coding downstream 132282 3524404 ~ 3525115 (+)
G487037 NA non-coding downstream 147646 3539768 ~ 3539996 (+)
G487152 NA non-coding downstream 404942 3797064 ~ 3797986 (+)
CI01000340_02930635_02933799 LSM2 other upstream 459900 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3078455 312212 ~ 313534 (+)
G485427 NA other upstream 3224066 163286 ~ 167634 (+)
G485373 NA other upstream 3277931 106885 ~ 113769 (+)
G487133 NA other downstream 581793 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 1007297 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1272187 4659584 ~ 4669322 (+)
G489634 NA other downstream 3302099 6694221 ~ 6700788 (+)
G490645 NA other downstream 5646690 9038812 ~ 9043101 (+)

Expression


Co-expression Network