Gene
RNA
| Item | Value |
|---|---|
| gene id | G488543 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 3465312 ~ 3473302 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560516 | False | 1851 | lncRNA | 0.45 | 8 | 3465312 | 3473302 |
| TU560515 | True | 1874 | lncRNA | 0.41 | 2 | 3470929 | 3473302 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_03406706_03449487 | EVI5 | coding | downstream | 15825 | 3406474 ~ 3449487 (-) |
| CI01000340_03403238_03403692 | NA | coding | downstream | 61620 | 3403223 ~ 3403692 (-) |
| CI01000340_03379959_03401892 | GFI1AB, GFI1 | coding | downstream | 63360 | 3379286 ~ 3401952 (-) |
| CI01000340_03342324_03363204 | TOMM70, TOMM70A | coding | downstream | 101693 | 3342301 ~ 3363619 (-) |
| CI01000340_02936853_02939837 | BCL6A, BCL6 | coding | downstream | 525475 | 2935637 ~ 2939837 (-) |
| CI01000340_03474617_03478517 | FAM69AB, FAM69A | coding | upstream | 658 | 3473960 ~ 3478517 (-) |
| CI01000340_03500913_03512175 | ZBTB11 | coding | upstream | 27029 | 3500331 ~ 3512695 (-) |
| CI01000340_03528645_03535760 | DPT | coding | upstream | 54998 | 3528300 ~ 3535960 (-) |
| CI01000340_03561521_03596697 | NDK7, NME7 | coding | upstream | 88177 | 3561479 ~ 3596697 (-) |
| CI01000340_03607549_03614126 | BIVM | coding | upstream | 133828 | 3607130 ~ 3614126 (-) |
| G488627 | NA | non-coding | downstream | 164093 | 3300988 ~ 3301219 (-) |
| G488540 | NA | non-coding | downstream | 249609 | 3215451 ~ 3215703 (-) |
| G488534 | NA | non-coding | downstream | 253688 | 3211391 ~ 3211624 (-) |
| G488507 | NA | non-coding | downstream | 279318 | 3165332 ~ 3185994 (-) |
| G488392 | NA | non-coding | downstream | 411582 | 2981344 ~ 3053730 (-) |
| G488643 | NA | non-coding | upstream | 41163 | 3514465 ~ 3514967 (-) |
| G488645 | NA | non-coding | upstream | 44203 | 3517505 ~ 3517756 (-) |
| G488649 | NA | non-coding | upstream | 48070 | 3521372 ~ 3521596 (-) |
| G488651 | NA | non-coding | upstream | 52046 | 3525348 ~ 3525600 (-) |
| G488663 | NA | non-coding | upstream | 70160 | 3543462 ~ 3544050 (-) |
| G487884 | NA | other | downstream | 1563040 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 2673903 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 3139596 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 3383217 | 62780 ~ 82095 (-) |
| G488782 | NA | other | upstream | 532503 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 1033894 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 1126918 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 1847451 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 2709988 | 6095704 ~ 6194501 (-) |
