G486856


Basic Information

Item Value
gene id G486856
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3521566 ~ 3523856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558627
TCTTTAGTGACAACACAATAACAAAACTGGGGTAATAAGGATTAGTTTGGGGCAGTATTAGTCACAGCATCTCATTTATTTGTGCCATCACAGGCTGTAAAACTGTGATTCATGCACTTCAATCTAGCAACCATGCAGTCACTACTACACAATGTAGCCCCTAATAATAAGCCCTTTGTCAGATGACTCTCAAATCACACTGAGAGTAAACAGGCAGTACTGGTTCATCTTATAACTAGGGGCCTCTCTGTTTCCCAGAATGCACCAGCAGGCTGCTTCCCGAAGGACTACAATAGATGTGACCTAATGCTGACATTGCTTAGATAGATGTGATTGTGAATAAAACATTCACAAACCACTCATTTGGAAACAACCTATTGATATGCAAAGCTCTATCAAAGGACCGAAATCAACATACTTCACGCGTTCTGTTCCCTTTAAAACATTGTAAATAGTCTGCAATAAAATTTAAATATGCTGTTCACAGAAAACAAGCAATTCCTGGAGACTCAGAGTGTATCCAGGTATTCCTATAGTAATTATGAAAAGAATGTGGACAGATTTCTCAGAAATAGTTCAGTCACCTGTAGTCCTGCCTACTCTCGTGAACACACGCCTTGAAGTACAGAACTTAAAGTCATTGAACTTTGTCAAGGTCTCAGCTCACTGATGAAAAAAAAAGAACATTTCTAGTCAGTTAAAGGAAGAACGAGCACAGCATAGGAGAAGAAATGACAAGAACAAAGATCAGAATCATTGATTCTTGTGTGAATTTGAAATTTGACCTTGAAACGTAGAGGTCATGGTTTGGTGTGTGGCATATTCTTGTGTACTCAGCTTGTATCTTTGTGTTGTCGTACAGGTATGAGCGTAAGGCAATGAAAACTTGATGACAGCTTGGAAATGAGACATTATCAGGCAGGATTTTGGCTTTCACCTTTCCTGTACTACGGACGTGTCTTGTGACTGGACACAAAGAACAATGGAATAAGAAGGTGAGGGAGGAAGGAGAGAGGGAGGACAGAAAGGAGGAAAGAGGAGGGATCGTGGAGTATGTAAGGTCAGCAGAGTCAGGTTTCCTGGTTGAGCTTAAATCTGCTCTGTAACCATTAACACAAGTGACTCAGGCATCCAGCTTACTCCCACTATTAACCACAGAGGTTACCAAAGAGGTCACAAAGGTCGATTCCCAGGGCCTACCAGATCTCAATAATGCAATTTTTTTTTTTTTTTTTTTTTGTGAAATATTATCATTGTCTTGTCAGAGGTCGTTGTCAAAACTTATAGTGGAAGCCACTTAAACTTCAGCAGTCTGTGTGTTTATGCAAGTGTTCACACATTGAAGTGGTTAGGGGTGTAGTATTTTTAATAGGTAACCTAGACCCTCAGAGTTGAAAGTGGATATATACTCCTGCAGAAATAATGGGATGGTTGTATTTACACTGACCTATACCACAGTAGGAGCTTGGAAAGGTCCTGTTTTCTCTTCAGCCATTTAGATCTTCTTTTTGTCCTGCTGAACAACAGAGAAAAGAAGCAAGATCAACCTGTGCTCAGCTGATGAGGTTAAACCTTTAAAGGGATAGTTCACATACTGTCATTGTTTGCTTACCTCATGACATGAAACACATAAACAGAAGTTATGCTGTTTCACTGTTACTGGTGTGGTTACTAAAAAGCCACCATAAAAAATATAGTGAAAAATATTTTTTTCAGTCCTACGACATAGAATATTGGTGCCTCTATATTTTGCAACTTATAACCATGTATTTCATTAAGTGATATAATCTTAATATTACAGTAACACTTTACAATAAGGTTCATTAGTTAACATGAACTAATAATGAACTGCACTTATAAAGCATTTATTAATCTTTGTTAATGTTAATTTCAACATTTACTAATACATTATTAAAATCTTGTTAACATTAGTTAATGCACTGTGAACTAACATGAACAAACAATGAACAACTGTATTTTCATTAACTAACGTTAACGAAGATTAGTAAATACAGTAACAAATGTATTGCTCATGGTTAGTTCATGTTAGATAATACATTAACTAATGTTTAACTAATGAGCCTTATTGTAAAGTGTTACCAATATTTCTATCTACTTGAACTGCCAATATCTTTTTTGCTTTTTACCTTAAAATTTACTGATAAGCACCATAATACAAGAAGTAAAACAGAAAGCCACATGATAAATTCAACGTAAGCGGCCTGTTCATAAAGGGACATAAACACAAAGATAACATCAGGGTAAGGCACATGTACATTACTGATAACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558627 True 2291 lncRNA 0.37 1 3521566 3523856

Neighbor

gene id symbol gene type direction distance location
CI01000340_03471633_03472401 RPL5A, RPL5B, RPL5 coding upstream 49115 3471633 ~ 3472451 (+)
CI01000340_03370316_03378878 NA coding upstream 142566 3370275 ~ 3379000 (+)
CI01000340_03320562_03329314 TP63 coding upstream 191884 3320469 ~ 3329682 (+)
CI01000340_03291151_03315214 NA coding upstream 205809 3290647 ~ 3315757 (+)
CI01000340_03242647_03264271 NA coding upstream 256716 3242647 ~ 3264850 (+)
CI01000340_03552817_03560264 NA coding downstream 28493 3552349 ~ 3560324 (+)
CI01000340_03601425_03606062 NA coding downstream 76637 3600493 ~ 3606138 (+)
CI01000340_03616496_03620617 NA coding downstream 92640 3616496 ~ 3620970 (+)
CI01000340_03662829_03666784 ACTL6A coding downstream 138904 3662760 ~ 3666784 (+)
CI01000340_03679908_03709888 USP13 coding downstream 155968 3679824 ~ 3710049 (+)
G486847 NA non-coding upstream 108910 3409173 ~ 3412656 (+)
G486997 NA non-coding upstream 129444 3391700 ~ 3392122 (+)
G486996 NA non-coding upstream 133055 3388297 ~ 3388511 (+)
G486991 NA non-coding upstream 144063 3377045 ~ 3377503 (+)
G486990 NA non-coding upstream 144556 3376720 ~ 3377010 (+)
G486865 NA non-coding downstream 548 3524404 ~ 3525115 (+)
G487037 NA non-coding downstream 15912 3539768 ~ 3539996 (+)
G487152 NA non-coding downstream 273208 3797064 ~ 3797986 (+)
G487141 NA non-coding downstream 278191 3802047 ~ 3858204 (+)
G487125 NA non-coding downstream 343952 3867808 ~ 3870067 (+)
CI01000340_02930635_02933799 LSM2 other upstream 589766 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3208321 312212 ~ 313534 (+)
G485427 NA other upstream 3353932 163286 ~ 167634 (+)
G485373 NA other upstream 3407797 106885 ~ 113769 (+)
G487133 NA other downstream 450059 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 875563 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 1140453 4659584 ~ 4669322 (+)
G489634 NA other downstream 3170365 6694221 ~ 6700788 (+)
G490645 NA other downstream 5514956 9038812 ~ 9043101 (+)

Expression


Co-expression Network