G488582


Basic Information

Item Value
gene id G488582
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3618019 ~ 3621632 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU560561
TATTGCTTTTATAAAACGGTTACCACACAATACAAATATTAAAGCCAAGAAATATGTATCAATGCAACTTTCATGAAGTAAAATAATTAAAAGGCTTCCTTCCGCTGGAAAAAATAGTCCCTGACCGTGAACAGCTACAGAAGTTACATTATTACGCCTTTAGATGGCGGCAAAGATTGTTTTTATGAGCGAGTCAGGCAGTCGCAAAGACTTGTGTTGAAACTTGTGAACACGGAACAAGATGCAAATGAAAAATGCTTCGAATAGCGCTGTCAGTGTCCGCAGGGCACGGGAAAACCATTAAATGTTAAAAGGACAATATCGCAGCGGACATTCAAACGGATTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATTTGAATGCAGGTAATACACTTGGTCACTCGATATCTCTCTCAAAATACTCTTCTACATAAGCTTTAGTGAACAAAATCAATAGAGAACAATCATATGTTTACGTTGCTAAGAGTGGTTGCTAAGACAGACGCAGCAACATACACATTCAGTGGCGCAGCGATATTATGTAATGCGGTCAGCTGTATGTTTTCGGGAATTTTACAACTGCTTCGAACGCGGCTCAACCAATCAGAATCAAGGGCCGGAACTATCCGTTTTATAAATAACATTTTATTTCAGATCTTCTGAAGAGACACACACTTCATACTATGAACAGAATTTCACACAGTGATCAACTCATGATTCATATGAATTACTTTACAATATCTTTATGAACTTTTTGAAGTGTCAAAGTTTTGGTTGTGTGGACAGAAATCTCTCAAGTTTTAAAAAACATAATTTGTGTTTTAAAAATTAATGAAAGAAAAAACATTGGAATGACATGAGGGTGAGTGAAAGACAGAACTTCAGTTTTTAAGTGAACTAACTTAAACAGAACAGGAACACTTGCAGCATTAAAATTACAAAGGATTCTACATTTTAAGATTATAATCATGTAGTACAAATGCATTGCAAAGAAGCTTATTTCTATGTTAACTGTAAAGAAGCTTTGAGCATCAAGCTGAACTTTTTAAGGTCACATGTCCTCATCACAAATGCAAGATGGCCTTTCTGCAGTGTATTGGTTGGGTCCACAACCATCATGCCTCGTCCCAATGCACCTTGTACCTCTACACGTACGGCACACTGTAAACTCTCTGTAATCACGCTGCTGTCTACACAAGCTGCCACAGCAAAGGCATCGTAGGGTACAAACCCTTGCCCAAAAAGCACATCTTTTTTGTTTTTGATGGTGAAATCTCTTGAGTAGGCCCAGCACTTGGAGGTTATCTTCTTCATGAATCGAGCAGCTGATGTATCCTGATTGACCAGCTCATCAAAACACTCCTGGAAAAATATGAAGCACACAAGTTTGTCAGGCCTACAATATGTTCATGCAAGACTTGATTTTGCTCATGTTGAGAGGCTCTTACCCAAGACAGTTTGTTTCTGCAAGTGAACTCCCAGGTTGCGATGTGTGTCGGGCAGGTATATTCTTCCAAAACTACGTAAGCTGATTCAGCGTCCATACTAAAATTAAACTCTGCAGCTGGTGTCAGATTTCCCTTCCCTGGAAGATTAACAGTGGGCAGTGTGGGGAGATGAAGCTTTATAGAAAGAGTCCTGATTGGGGAACATGTCCTGACACTTTTTTTTATATATATATAAAATACATAATCACTGATAGAAAAAGTACAATTTGGAGGTACACATTTAAGGTGCCAAGTTTCTGTACAGCAGCTTATTTTCTTACCTTCCATATTGCCACCCATAATATACAGATCCTTGAGTTTCTGAGGGAGGGTGGGGTCTAAACTAACAGCCAAAGCCAAGTTAGTGAGTGGACCAAGAGCTATGAGAGATACCTATGTATGTAAACAAACAGGGCATTCCATTGTCAACCACAAGATGGCATTACAACATTCAGTAGAGGTCACTTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCATCATGTTGTTCCAAACCTGTATAAATTTCTTTGCTATGTTGAAAACAAAGGAAGATATTTTAAAGAATGTGTTAAACTGAACAGTTTTGGGGCACCATTGACTTCCATAGTAGTTTTTTTCCTACTATGGAAGTCAATGGTGCCCCAAAGTGGCCTAGTTACAAACTTTCATCAAAATATCTTCCTTTGTGCTAGTGCTGTTTGGAACAACTTGAGGGTGAGTAAATGATGACATAGTTTTGGGTGAAGTATTCCTTTAACTGCTTTTTAAACATTCTTACCCAGTGGTTCTTAACCTTTTTGACTCCATTTTTAAAAACAATATATGCTTCCCAAGATATTTATTGATACTTCTGTTGTAATGACAAATCTGCTCTTTTCAAACTTTATTTATAGAAACTAGGAGTGGTAATATACTAAAATTCCATTTTTCCAGAAGTTTCAACTCTTCAGGGTTTAGAGTTTTTATTACCAATGCATTCACATGACTTGTCTAGTTGATGGTGATTACAGGGTTTTTTATTGTTTATCAGATTCTTTTACAACCCTTATTCTTAAATAAAAATAGCAGTTAAGGGAACAAATAAAAAAATATATTAGCTTACATTTGAGTTGTTTTAGCTTATTTTAAATCTTGTTTTGTCTTATTTTAAATCATTTTAAGCCATTTTGTCCCCTTGAAAGTCTGCTGTAACCCTTCTATAGTATTTGGGTAATTTTTTGCCCATCTTCAGTAAAGAATACTCTATTAATACCACATTGTTTTTTAGTTTTTGAACCAGGCTTTGCGACAGTCAAGAATAAAAATGTAACAATATCATATTGTGGATAGTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU560561 True 2854 lncRNA 0.36 2 3618019 3621632

Neighbor

gene id symbol gene type direction distance location
CI01000340_03607549_03614126 BIVM coding downstream 3893 3607130 ~ 3614126 (-)
CI01000340_03561521_03596697 NDK7, NME7 coding downstream 21322 3561479 ~ 3596697 (-)
CI01000340_03528645_03535760 DPT coding downstream 82059 3528300 ~ 3535960 (-)
CI01000340_03500913_03512175 ZBTB11 coding downstream 105324 3500331 ~ 3512695 (-)
CI01000340_03474617_03478517 FAM69AB, FAM69A coding downstream 139502 3473960 ~ 3478517 (-)
CI01000340_03622734_03659141 TMEM131 coding upstream 338 3621970 ~ 3659156 (-)
CI01000340_03670820_03675367 NA coding upstream 49081 3670713 ~ 3675367 (-)
CI01000340_03713291_03747080 PEX5L, PEX5LA coding upstream 91121 3712753 ~ 3747272 (-)
CI01000340_03750211_03772917 NA coding upstream 128303 3749935 ~ 3773916 (-)
CI01000340_04086574_04090310 NA coding upstream 464598 4086230 ~ 4090310 (-)
G488664 NA non-coding downstream 73423 3544379 ~ 3544596 (-)
G488663 NA non-coding downstream 73969 3543462 ~ 3544050 (-)
G488651 NA non-coding downstream 92419 3525348 ~ 3525600 (-)
G488649 NA non-coding downstream 96423 3521372 ~ 3521596 (-)
G488645 NA non-coding downstream 100263 3517505 ~ 3517756 (-)
G488588 NA non-coding upstream 241520 3863152 ~ 3863573 (-)
G488568 NA non-coding upstream 246172 3867804 ~ 3869876 (-)
G488748 NA non-coding upstream 250052 3871684 ~ 3872011 (-)
G488750 NA non-coding upstream 252826 3874458 ~ 3874738 (-)
G488593 NA non-coding upstream 271137 3892769 ~ 3893172 (-)
G487884 NA other downstream 1715747 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 2826610 786551 ~ 791409 (-)
G485786 NA other downstream 3292303 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 3535924 62780 ~ 82095 (-)
G488782 NA other upstream 384173 4005805 ~ 4006448 (-)
G488862 NA other upstream 885564 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 978588 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 1699121 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 2561658 6095704 ~ 6194501 (-)

Expression


Co-expression Network