G487152


Basic Information

Item Value
gene id G487152
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3797064 ~ 3797986 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558954
CCATCATAAATGTAAAGAAAAGTATTGTACGTCTTGTGGGAACAGAGTCTTACCTGCAAATGCCCCTGGTACATATTTAGTGGAGAATAAGAAAGGTCCCAGACTATGGATCACAGCTAGATGAGCACAAGAAATATGATGACACTTCTAATGTTCATGCGTGCGAGAGTGTTCTGAAAGTACTAAAAGAACTGCTCTTGAAATTGAGTCCAGTTAGGGAAGCCGACACACTGGAGCTGTCTCGTGAACCAAGTGCTGAATTTACGCGCACGCGATAGCTTTCGTCACCGATGCACTTTATAAGGTGAGGAGGCTTCAGCGCAGCTGCTTCCAAGCTTCACGCGCGCCGGCGAGTCTCTTCACCAACTTGCTGAGGCGCGCGATGGATGCGCTGAAGGCTCGAGAATCGTGCCTACGTCATAATCAAAGCCCCGGCGCGGCTTTCAGCGTTTTATCTTAGTTGTTCTGATTCTTCAGCAATTCCTCCCTCCTTTATCAGACTCTCTCTCTCTCTCTCTCCTTGTCGACTGTTCGTCCTCTCTTCTCCCCCAACGGATTTAGGCGGAGCTGGTTCCGTCATTCAAAGAAGCGTCGCTGCACGCGCAGTTGCCCAGTCCAGGTGTTCTCATCGTTTTAATGTTCAGCTACTGACAAAATCAAGTGAATATCTATCTCGGTCCTCCTCCTCGTGTGTTGTTCCTCGTAGCTTCGGAGCAAGGAGGCGCCACTTGCATTTGTTTTGTTACATAATAGTCAATTGCCAGAGGTGTGATAAGGTGAAGAAATATAGCAGAAAACATGCTTATTAGCAACATTACAAATAAATGCTTATTTTCACAATGTTTTTTTTTTTTTTTTCTAAAGGTAAAATATTTTGTTGACTTGCATTACTAAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU558954 True 897 lncRNA 0.45 2 3797064 3797986

Neighbor

gene id symbol gene type direction distance location
CI01000340_03679908_03709888 USP13 coding upstream 87015 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 130280 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 176094 3616496 ~ 3620970 (+)
CI01000340_03601425_03606062 NA coding upstream 190926 3600493 ~ 3606138 (+)
CI01000340_03552817_03560264 NA coding upstream 236740 3552349 ~ 3560324 (+)
CI01000340_03853070_03866459 PHB2 coding downstream 55022 3853008 ~ 3866815 (+)
CI01000340_03908893_03911941 NA coding downstream 110774 3908760 ~ 3912526 (+)
CI01000340_03926585_04057475 DLG1 coding downstream 128599 3926585 ~ 4057475 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 262316 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 276062 4074048 ~ 4081469 (+)
G487037 NA non-coding upstream 257068 3539768 ~ 3539996 (+)
G486865 NA non-coding upstream 271949 3524404 ~ 3525115 (+)
G486856 NA non-coding upstream 273208 3521566 ~ 3523856 (+)
G486847 NA non-coding upstream 384408 3409173 ~ 3412656 (+)
G486997 NA non-coding upstream 404942 3391700 ~ 3392122 (+)
G487141 NA non-coding downstream 4061 3802047 ~ 3858204 (+)
G487125 NA non-coding downstream 69822 3867808 ~ 3870067 (+)
G487184 NA non-coding downstream 80908 3878894 ~ 3879122 (+)
G487186 NA non-coding downstream 82022 3880008 ~ 3880250 (+)
G487187 NA non-coding downstream 82505 3880491 ~ 3880698 (+)
CI01000340_02930635_02933799 LSM2 other upstream 865264 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3483819 312212 ~ 313534 (+)
G485427 NA other upstream 3629430 163286 ~ 167634 (+)
G485373 NA other upstream 3683295 106885 ~ 113769 (+)
G487133 NA other downstream 175929 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 601433 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 866323 4659584 ~ 4669322 (+)
G489634 NA other downstream 2896235 6694221 ~ 6700788 (+)
G490645 NA other downstream 5240826 9038812 ~ 9043101 (+)

Expression


Co-expression Network