G487186


Basic Information

Item Value
gene id G487186
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3880008 ~ 3880250 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558989
CTCCATTGTTATCTCGCCTTCTCATTTGTCAGGGTTTATATCTGTACCTACCAACGTGTACTGTACAGAACAGGCAGGTATGTTATCAGGCCCTCTATCAATATGGAAATCTTGAAATCTCATTTGTGTCTGGATAAATGTTTGTGGTCAAAGTTGAGGCTTGTTTGTCATTATACACATGCAAGTTCTAAAGTCCATGTTAAGCTGAACATTATTATGTACTGGCACAGTTTTTTCTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558989 True 243 lncRNA 0.37 1 3880008 3880250

Neighbor

gene id symbol gene type direction distance location
CI01000340_03853070_03866459 PHB2 coding upstream 13193 3853008 ~ 3866815 (+)
CI01000340_03679908_03709888 USP13 coding upstream 169959 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 213224 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 259038 3616496 ~ 3620970 (+)
CI01000340_03601425_03606062 NA coding upstream 273870 3600493 ~ 3606138 (+)
CI01000340_03908893_03911941 NA coding downstream 28510 3908760 ~ 3912526 (+)
CI01000340_03926585_04057475 DLG1 coding downstream 46335 3926585 ~ 4057475 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 180052 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 193798 4074048 ~ 4081469 (+)
CI01000340_04249473_04264824 SHROOM2A coding downstream 369223 4249473 ~ 4266007 (+)
G487184 NA non-coding upstream 886 3878894 ~ 3879122 (+)
G487125 NA non-coding upstream 9941 3867808 ~ 3870067 (+)
G487141 NA non-coding upstream 21804 3802047 ~ 3858204 (+)
G487152 NA non-coding upstream 82022 3797064 ~ 3797986 (+)
G487037 NA non-coding upstream 340012 3539768 ~ 3539996 (+)
G487187 NA non-coding downstream 241 3880491 ~ 3880698 (+)
G487189 NA non-coding downstream 5574 3885824 ~ 3886230 (+)
G487196 NA non-coding downstream 42802 3923052 ~ 3924287 (+)
G487128 NA non-coding downstream 67178 3947428 ~ 3950320 (+)
G487134 NA non-coding downstream 78005 3958255 ~ 3968426 (+)
CI01000340_02930635_02933799 LSM2 other upstream 948208 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3566763 312212 ~ 313534 (+)
G485427 NA other upstream 3712374 163286 ~ 167634 (+)
G485373 NA other upstream 3766239 106885 ~ 113769 (+)
G487133 NA other downstream 93665 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 519169 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 784059 4659584 ~ 4669322 (+)
G489634 NA other downstream 2813971 6694221 ~ 6700788 (+)
G490645 NA other downstream 5158562 9038812 ~ 9043101 (+)

Expression


Co-expression Network