G487189


Basic Information

Item Value
gene id G487189
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3885824 ~ 3886230 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558994
CGCATAATCGAGATTTTCGCTTACCGTGTCATGGTGGAACAGAGTCCTGCAATAATGAGAGTAGGCTGTGTATATAGGATAGTAATACCAGTGTATTAGCCTACTATGTCGACGCTGCGCCAGGAGCTATATTGCTTTGCGGCGTTTTTGTTTGTATGTTTTTGTTTTCTCTTTAATAGTAGAAATATGTTGTATTATCTCTTTATATGATGTTATACTAGCTCTTTAATCGTATTAATACATTATTATCCTTAATCATAAAATAATATAGGCCTAACGTGTTTTATTTGTTTGTTTGTTTTTATCAATAGTAATCCCCGCGCGCAAAAAAAAAAAAAAAATTACCAATAGTGTCTGCCAAATTGCCACCATTCTAATTATTCTCACAATAACCTGTTATTAACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558994 True 407 lncRNA 0.33 1 3885824 3886230

Neighbor

gene id symbol gene type direction distance location
CI01000340_03853070_03866459 PHB2 coding upstream 19009 3853008 ~ 3866815 (+)
CI01000340_03679908_03709888 USP13 coding upstream 175775 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 219040 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 264854 3616496 ~ 3620970 (+)
CI01000340_03601425_03606062 NA coding upstream 279686 3600493 ~ 3606138 (+)
CI01000340_03908893_03911941 NA coding downstream 22530 3908760 ~ 3912526 (+)
CI01000340_03926585_04057475 DLG1 coding downstream 40355 3926585 ~ 4057475 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 174072 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 187818 4074048 ~ 4081469 (+)
CI01000340_04249473_04264824 SHROOM2A coding downstream 363243 4249473 ~ 4266007 (+)
G487187 NA non-coding upstream 5126 3880491 ~ 3880698 (+)
G487186 NA non-coding upstream 5574 3880008 ~ 3880250 (+)
G487184 NA non-coding upstream 6702 3878894 ~ 3879122 (+)
G487125 NA non-coding upstream 15757 3867808 ~ 3870067 (+)
G487141 NA non-coding upstream 27620 3802047 ~ 3858204 (+)
G487196 NA non-coding downstream 36822 3923052 ~ 3924287 (+)
G487128 NA non-coding downstream 61198 3947428 ~ 3950320 (+)
G487134 NA non-coding downstream 72025 3958255 ~ 3968426 (+)
G487197 NA non-coding downstream 82438 3968668 ~ 3968910 (+)
G487198 NA non-coding downstream 83539 3969769 ~ 3970093 (+)
CI01000340_02930635_02933799 LSM2 other upstream 954024 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3572579 312212 ~ 313534 (+)
G485427 NA other upstream 3718190 163286 ~ 167634 (+)
G485373 NA other upstream 3772055 106885 ~ 113769 (+)
G487133 NA other downstream 87685 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 513189 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 778079 4659584 ~ 4669322 (+)
G489634 NA other downstream 2807991 6694221 ~ 6700788 (+)
G490645 NA other downstream 5152582 9038812 ~ 9043101 (+)

Expression


Co-expression Network