G487128


Basic Information

Item Value
gene id G487128
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3947428 ~ 3950320 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU558930
TGTTTTATTGAAGATGAGGGATATGTTAATAACAAGCAAGGTTCATATATTTACTGGTCCAAAGTAAGCAGATTTTGAATATTACTTTGAGATTCAGAGAACGTTTAATAAAGCGACTGTTCAAATCAAGCATGTACTTTAATGACAGTCAGAAATCTAGTTTCCAGGGTAAACTGTTTTTCAGGAGGTGTGATGAAATGTCATTTCCTCTTCATCAGGACATGTTGAACAGCTTGCAGCTATGGGAAGTGTAAAAATATGAGTGATTTAATACATGTAGAGGAATGATCTTTATTAGTTAAAACATTTTCAGAGCATCAGTGTTTTATAACTGGGCTCAACAGTAAGGATTTCTCTATTGGCCCAGTGGGGCTACCATTTTCTCTGGTGTATATTTTGCCTGACACATACATACTACAAAATTAAATAAATAAATGAATAAATAAATAATTCACAACAGTAATGTTCAGTACATCACATAAAATCTGTTTACATTTGGAATATAAGATGTTATTGATAATTCAGCACTGCCCTGAAACTCTCACACTGGCCCTCGGCCATTAGGCGTGAGGGCTATGTAATGTTTTAAGAAATTCTTGTGGTCTGCCTAAAAACCTAAGAGTGTGAGAATAGAAATATGTAGTGCTGCATTTTGACAGTTTTATTCACTTTTATTTATTCTTCCCATAAGGAGATGCATTTGGGACACCAGCTTTCTAATTCTTTTTTTCCATACAGTTTGAGGTCATCTCCACACCACATTATAAGGGGATTCAGTACTTATTTTAGTCAACTGAAGCGGCTCTATTTTAAGGAGTTTCCTGTGTCAGTTTCCCCTGGATTTGTAAACTATGATTATAGGCCCATTACATTGTGGCCTCAGTGAAACCAGAAATGATGTTCAGCTGTATTTAACAGCTTTTTAGAATTTCAATGTTTTATATAGTCTCATCAGTATGTCAAGGATAATGTAGTCATTCAGGTCTTGTGTCACCCTAAAGTGGTTTATTTTGCAATAATGACCAGCTGACTATATAATTCTGCTTAATACACTGGTAATACATACATAAATGAATAAATTTAAACATGACAAGTGTTGGGGTAACGCATTACAAGTAACGTGCGTTACATAATCAGATTACTTTTTGACGTAACGAGTACAGTAACACATTACTTTATAAATTTACACATTACTTTTCTTTAAAAAAGTAACTCAAATATTAATGCATGTTACTTTTCAGTTTAATTAATTTGCTTAAATATTTTTTAAACTACTTCATTAAAATTCTCTTGCTAATAATTATGCAGAAAAATATTAAACGGGCATTATCTCTGTTATTATGAAATTTCTTCTAATTTTTATTAAGAAATTCAAATTCAACGGTTCAAATGAGTAGCGCTGTTTCGTTCCACTTTTGGAGCATACACATTATATCGAACTCTTGCTATCGTTTTATTGAAGAAAAATTATATTCCAATAATTGTTGTTTTATCGCCCAGCCCTAGTTGTAATACAGAACCTGTGTGGTGAAACAATATGAAACTAGCAAAGCTAAGAAATCAGCTGCATGGGTCAATTAGATAATTTAGTGGTTGTACATTTGGAGCAGATGTGGCGGTCCTTGCAGCACGCGTTTCATTTTGATTTCTTTCAATGTCAAACTCTGTGTTTGAAGTGAGTGTGCTTGCAGAACGGTGAGGTGTCTCTGCCTGCTGAGAGCTCATAGCTGTGGGTTGGACTGATGAAGTGGTGTCAGCGTGATTTTTACTCTGTGTGGGCGGCAGGAAGGACTGGAGGTGATATGAAGGAGTCATGCGTCAGCTTGAGCTCTCATAGGTCACCACCTGCAAACCATGCAATCCCTTCATGTTTATAGACAGAGAAACAAAGTGTAGTTTAAGATGTAAAGGATGGATAAAGGTATTGATACTGGAATTATAAATTAGGAACAAAATCAACAATACAGGGACTCGAGTTCCTAATTCTTATCATAAATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAGCAGTTAAGAAGAATGTTATTCTTATGAATCTGGCCTCAGGTTTTTTTTTTAAATATGTGAGGTACCTTATTCAAGTCTTTCATGTGAAAACACACAAATCCCACGTTTTTTCTGTGGTGAGTTATATTCTCATCCTTGAATGTCAAAGTAATTTAACACTGCCCTCTACTGTATTTAGTAGAACCAGAAAATGTTTTTTCCCCCACCCAAAACTCACAGGATGCATTCTGGTCAAGTTTACAGTAAACTGTAAACAAAATCTGATTGCTCTAAACACTGTTGCTCTGAATTCAAGAATGCCGCCACGCTACTTTTCAGTTTGTGTAATTCACACCATTCCAAACATTGTGTCTAAACAAATCTACACCTGTGTGGATTAGACAGGGATATTGGGTTAGTTAAAGGGTTAGTTCACCCCAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCAAACCTGTAAGACTTTCGTTCATCTTCGGAACACAAATGAAGATCTTTTTGATGAAATCTGAGAGCTTTCTGTCCCTCCATAGACAGCTACGCAACTGACACTTTGACGCTTCAAAAAGTTCATAAAGAGATCATAAAACTAATCCATATGAATTGAGTGGTTTAGTCCAAATTTTCTGAAGGGACTTGATCGCTTTTTATCATGAACCGATTTAATTTAGGCTTTTATTCACATGTAAACATTGATTAGCGAACATAAACAGCTCAACCGTGCTAGAACAAACCTCTTGCGGAAGCTCAAACGTGCTGTGTAACACATGAGAATGAACCTCACTGGTTCTCACAGGTCAAGCAAACATGCTTCAACTTGTTATCCAATGATTTACTCACCCTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU558930 True 2893 lncRNA 0.35 1 3947428 3950320

Neighbor

gene id symbol gene type direction distance location
CI01000340_03908893_03911941 NA coding upstream 34902 3908760 ~ 3912526 (+)
CI01000340_03853070_03866459 PHB2 coding upstream 80613 3853008 ~ 3866815 (+)
CI01000340_03679908_03709888 USP13 coding upstream 237379 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 280644 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 326458 3616496 ~ 3620970 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 109982 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 123728 4074048 ~ 4081469 (+)
CI01000340_04249473_04264824 SHROOM2A coding downstream 299153 4249473 ~ 4266007 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding downstream 323277 4273597 ~ 4274533 (+)
CI01000340_04310811_04341754 WWC3 coding downstream 360491 4310811 ~ 4341754 (+)
G487196 NA non-coding upstream 23141 3923052 ~ 3924287 (+)
G487189 NA non-coding upstream 61198 3885824 ~ 3886230 (+)
G487187 NA non-coding upstream 66730 3880491 ~ 3880698 (+)
G487186 NA non-coding upstream 67178 3880008 ~ 3880250 (+)
G487184 NA non-coding upstream 68306 3878894 ~ 3879122 (+)
G487134 NA non-coding downstream 7935 3958255 ~ 3968426 (+)
G487197 NA non-coding downstream 18348 3968668 ~ 3968910 (+)
G487198 NA non-coding downstream 19449 3969769 ~ 3970093 (+)
G487200 NA non-coding downstream 72248 4022568 ~ 4023153 (+)
G487201 NA non-coding downstream 76276 4026596 ~ 4026846 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1015628 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3634183 312212 ~ 313534 (+)
G485427 NA other upstream 3779794 163286 ~ 167634 (+)
G485373 NA other upstream 3833659 106885 ~ 113769 (+)
G487133 NA other downstream 23595 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 449099 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 713989 4659584 ~ 4669322 (+)
G489634 NA other downstream 2743901 6694221 ~ 6700788 (+)
G490645 NA other downstream 5088492 9038812 ~ 9043101 (+)

Expression


Co-expression Network