G488782


Basic Information

Item Value
gene id G488782
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4005805 ~ 4006448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU560772
ATCCAATGAAAACGTGCCCCAAGAATTGGCAAGCCACAAGGCACTGGAAGAAGCTCTGACTTTAGCTGTGCTTTTGGTGGGGCTCTTTTTCACACTATCCCTCAGGTTGGTGAACTTTCCTCTGCTCTTGGTGGAGGCTGGAAGGGTGCAGGAGCTGTACTGTGGAACCCTGTGGGACTCCAGATGAGTCTGCTGGAAGTTGAGAAGGGCGGGCTGAGGCAGGTGAGGCAGCGGCTGCTGCTGCTGCTGGTGCAGATGGTGGTGGAAATGATGATGGAATTGCGGTTGTTGCACCAACTGTTTCGGCGTTCGGGTCAGCGTATTGTGCACGTGTCCAACCCTCTGTTGCATTCTGGGATGGTTGCAGTTGGCCATCTCCGTCACCCCGGTCCGACAGTCCACGTAAGCGCCGCAGCAGTATTCATGGTTGTTTGTATAGGTGGTCATTGTTTTCCAAGCAGAGGGGCACCACAGCAGACCATCAGGTGGACGCCAGGTGAAATGATGGGGAACGCAGCCCGAAGAGTGATGCGCTTACTTTGCTGAGCAATCGGGAAGGAGAGAGAGGACACACCGTGGTTGTAAATCTGGTCCTTTTCCCCTGGCTCCTCTCTTCTGCCAGCCTCTCTCACAGTCTATCTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU560772 True 644 TUCP 0.55 1 4005805 4006448

Neighbor

gene id symbol gene type direction distance location
CI01000340_03750211_03772917 NA coding downstream 231889 3749935 ~ 3773916 (-)
CI01000340_03713291_03747080 PEX5L, PEX5LA coding downstream 258533 3712753 ~ 3747272 (-)
CI01000340_03670820_03675367 NA coding downstream 330438 3670713 ~ 3675367 (-)
CI01000340_03622734_03659141 TMEM131 coding downstream 346649 3621970 ~ 3659156 (-)
CI01000340_03607549_03614126 BIVM coding downstream 391679 3607130 ~ 3614126 (-)
CI01000340_04086574_04090310 NA coding upstream 79782 4086230 ~ 4090310 (-)
CI01000340_04277249_04284722 NA coding upstream 270691 4277139 ~ 4285407 (-)
CI01000340_04362537_04371224 LURAP1 coding upstream 355927 4362375 ~ 4371224 (-)
CI01000340_04381260_04383972 TTC4 coding upstream 374636 4381084 ~ 4383972 (-)
CI01000340_04384950_04386594 PARS2 coding upstream 378362 4384810 ~ 4386594 (-)
G488781 NA non-coding downstream 2223 4003298 ~ 4003582 (-)
G488780 NA non-coding downstream 3291 4002302 ~ 4002514 (-)
G488779 NA non-coding downstream 3655 4001938 ~ 4002150 (-)
G488778 NA non-coding downstream 4984 4000463 ~ 4000821 (-)
G488777 NA non-coding downstream 6093 3999448 ~ 3999712 (-)
G488783 NA non-coding upstream 9 4006457 ~ 4006800 (-)
G488784 NA non-coding upstream 3122 4009570 ~ 4009799 (-)
G488785 NA non-coding upstream 3750 4010198 ~ 4010503 (-)
G488786 NA non-coding upstream 6311 4012759 ~ 4013473 (-)
G488787 NA non-coding upstream 9089 4015537 ~ 4015752 (-)
G487884 NA other downstream 2103533 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 3214396 786551 ~ 791409 (-)
G485786 NA other downstream 3680089 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 3923710 62780 ~ 82095 (-)
G488862 NA other upstream 500748 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 593772 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 1314305 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 2176842 6095704 ~ 6194501 (-)
G489511 NA other upstream 2314009 6320457 ~ 6327372 (-)

Expression


Co-expression Network