G487200


Basic Information

Item Value
gene id G487200
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4022568 ~ 4023153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559012
CAGTCGATAATGTAGCACCTTGGTGATGTTCCAGAGGCAGGCCAGATCCCCCAGCATTAGATCCTGAGAAAGGAAGCTGTCATTAGGGCTTAAAGGCATGAAGGACAAAAGCACATTTAATCATGAAGTACATCACGTGGCCAGCTCCCCCATCCGGCAAATACAGCATTAGTATATGTAGAAATGAGTGCGTGTGCAAGTGTTGCAGAGGGAGTTTTAAAGCCGCATAAGGATATCTGCACATGTAGACAACACTGTCTCGGTCATGTGAGTGCGTACAATGTGATTTTTCAAGGAAGGCGTAAACAGAACAATTTCATTAGTGATCCCATTTCATTATATCTGTCAGCCAGTCAGGCACTGAGTAGAGCTTTGACACGTGAAGGACTGTTTGATGAGAATTAAATAAATGGGTTGTCGATGTCTGCAGTTAGTAATTGCCCAGTGCGTACCCTTGACTTTATTACACTTTACATCTGACACAGTGAAATAAGGACACATCTTTTAAAGTAGTGACATCTATTATAGAGATTTAAAAGGATTTTGTTTTCAGAAAATGAAATTTCTGCCATTATTTACACACCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU559012 True 586 lncRNA 0.41 1 4022568 4023153

Neighbor

gene id symbol gene type direction distance location
CI01000340_03908893_03911941 NA coding upstream 110042 3908760 ~ 3912526 (+)
CI01000340_03853070_03866459 PHB2 coding upstream 155753 3853008 ~ 3866815 (+)
CI01000340_03679908_03709888 USP13 coding upstream 312519 3679824 ~ 3710049 (+)
CI01000340_03662829_03666784 ACTL6A coding upstream 355784 3662760 ~ 3666784 (+)
CI01000340_03616496_03620617 NA coding upstream 401598 3616496 ~ 3620970 (+)
CI01000340_04060349_04070533 MFI2 coding downstream 37149 4060302 ~ 4071410 (+)
CI01000340_04074777_04081250 LRRC40 coding downstream 50895 4074048 ~ 4081469 (+)
CI01000340_04249473_04264824 SHROOM2A coding downstream 226320 4249473 ~ 4266007 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding downstream 250444 4273597 ~ 4274533 (+)
CI01000340_04310811_04341754 WWC3 coding downstream 287658 4310811 ~ 4341754 (+)
G487198 NA non-coding upstream 52475 3969769 ~ 3970093 (+)
G487197 NA non-coding upstream 53658 3968668 ~ 3968910 (+)
G487134 NA non-coding upstream 54142 3958255 ~ 3968426 (+)
G487128 NA non-coding upstream 72248 3947428 ~ 3950320 (+)
G487196 NA non-coding upstream 98281 3923052 ~ 3924287 (+)
G487201 NA non-coding downstream 3443 4026596 ~ 4026846 (+)
G487202 NA non-coding downstream 4969 4028122 ~ 4028366 (+)
G487203 NA non-coding downstream 5223 4028376 ~ 4028667 (+)
G487253 NA non-coding downstream 324215 4347368 ~ 4347575 (+)
G487255 NA non-coding downstream 327667 4350820 ~ 4351036 (+)
G487133 NA other upstream 40023 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1090768 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 3709323 312212 ~ 313534 (+)
G485427 NA other upstream 3854934 163286 ~ 167634 (+)
G485373 NA other upstream 3908799 106885 ~ 113769 (+)
CI01000340_04399692_04401164 NA other downstream 376266 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 641156 4659584 ~ 4669322 (+)
G489634 NA other downstream 2671068 6694221 ~ 6700788 (+)
G490645 NA other downstream 5015659 9038812 ~ 9043101 (+)
G490826 NA other downstream 5102031 9125184 ~ 9131397 (+)

Expression


Co-expression Network