G487253


Basic Information

Item Value
gene id G487253
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4347368 ~ 4347575 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559074
TGCTGGCTTCCTCCTTTCAGCATCAGTAGTCAAGGAGGGACCAATAAACACAAGAGACTGATTCTCCCACATACTCTCTCTGTGACTGGAATACTTCTCAACTACACACAGAGACACAGACCTAGCCTCCTTTGTGTCCACTTCAACAGCTCTACACCTGCTTCCAATTAGAACTGTATTTAAGGCACACGCAAGTGGGTATGCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559074 True 208 lncRNA 0.47 1 4347368 4347575

Neighbor

gene id symbol gene type direction distance location
CI01000340_04310811_04341754 WWC3 coding upstream 5614 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 72835 4273597 ~ 4274533 (+)
CI01000340_04249473_04264824 SHROOM2A coding upstream 81361 4249473 ~ 4266007 (+)
CI01000340_04074777_04081250 LRRC40 coding upstream 265899 4074048 ~ 4081469 (+)
CI01000340_04060349_04070533 MFI2 coding upstream 275958 4060302 ~ 4071410 (+)
CI01000340_04374493_04379773 TTC22 coding downstream 26741 4374316 ~ 4380485 (+)
CI01000340_04387653_04393950 NA coding downstream 40078 4387653 ~ 4394119 (+)
CI01000340_04399692_04401164 NA coding downstream 51977 4399419 ~ 4401496 (+)
CI01000340_04564752_04566790 NA coding downstream 217036 4564611 ~ 4567156 (+)
CI01000340_04660938_04668996 NA coding downstream 312009 4659584 ~ 4669322 (+)
G487203 NA non-coding upstream 318701 4028376 ~ 4028667 (+)
G487202 NA non-coding upstream 319002 4028122 ~ 4028366 (+)
G487201 NA non-coding upstream 320522 4026596 ~ 4026846 (+)
G487200 NA non-coding upstream 324215 4022568 ~ 4023153 (+)
G487198 NA non-coding upstream 377275 3969769 ~ 3970093 (+)
G487255 NA non-coding downstream 3245 4350820 ~ 4351036 (+)
G487256 NA non-coding downstream 4742 4352317 ~ 4352552 (+)
G487257 NA non-coding downstream 5735 4353310 ~ 4353517 (+)
G487258 NA non-coding downstream 6095 4353670 ~ 4354102 (+)
G487260 NA non-coding downstream 8591 4356166 ~ 4396610 (+)
G487133 NA other upstream 364823 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1415568 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4034123 312212 ~ 313534 (+)
G485427 NA other upstream 4179734 163286 ~ 167634 (+)
G485373 NA other upstream 4233599 106885 ~ 113769 (+)
G489634 NA other downstream 2346646 6694221 ~ 6700788 (+)
G490645 NA other downstream 4691237 9038812 ~ 9043101 (+)
G490826 NA other downstream 4777609 9125184 ~ 9131397 (+)

Expression


Co-expression Network