G487260


Basic Information

Item Value
gene id G487260
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4356166 ~ 4396610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559081
CAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCATTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTCTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACATTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAGTTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559081 True 463 lncRNA 0.40 2 4356166 4396610

Neighbor

gene id symbol gene type direction distance location
CI01000340_04310811_04341754 WWC3 coding upstream 14412 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 81633 4273597 ~ 4274533 (+)
CI01000340_04249473_04264824 SHROOM2A coding upstream 90159 4249473 ~ 4266007 (+)
CI01000340_04074777_04081250 LRRC40 coding upstream 274697 4074048 ~ 4081469 (+)
CI01000340_04060349_04070533 MFI2 coding upstream 284756 4060302 ~ 4071410 (+)
CI01000340_04399692_04401164 NA coding downstream 2942 4399419 ~ 4401496 (+)
CI01000340_04564752_04566790 NA coding downstream 168001 4564611 ~ 4567156 (+)
CI01000340_04660938_04668996 NA coding downstream 262974 4659584 ~ 4669322 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 412404 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 707749 5104359 ~ 5112713 (+)
G487258 NA non-coding upstream 2064 4353670 ~ 4354102 (+)
G487257 NA non-coding upstream 2649 4353310 ~ 4353517 (+)
G487256 NA non-coding upstream 3614 4352317 ~ 4352552 (+)
G487255 NA non-coding upstream 5130 4350820 ~ 4351036 (+)
G487253 NA non-coding upstream 8591 4347368 ~ 4347575 (+)
G487280 NA non-coding downstream 30964 4427574 ~ 4429926 (+)
G487282 NA non-coding downstream 35489 4432099 ~ 4432647 (+)
G487289 NA non-coding downstream 44293 4440903 ~ 4491970 (+)
G487322 NA non-coding downstream 105936 4502546 ~ 4503214 (+)
G487323 NA non-coding downstream 107325 4503935 ~ 4504201 (+)
G487133 NA other upstream 373621 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1424366 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4042921 312212 ~ 313534 (+)
G485427 NA other upstream 4188532 163286 ~ 167634 (+)
G485373 NA other upstream 4242397 106885 ~ 113769 (+)
G489634 NA other downstream 2297611 6694221 ~ 6700788 (+)
G490645 NA other downstream 4642202 9038812 ~ 9043101 (+)
G490826 NA other downstream 4728574 9125184 ~ 9131397 (+)

Expression


Co-expression Network